Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0756 ATGGCAAGTGCTTCTGCGGTCTCAGCTCATGTTAGAAGGCTTGAGGGGAAAGTGGCGATTATCACTGGTGGTGCAAGCGGCATAGGTGAGGCCACTGCAAGACTCTTCTCTAAGCACGGAGCACACCTTGTCATAGCTGACATTCAAGACGATTTGGGCCTCTCTCTTTGCAAACACTTGGAATCCGCTTCCTATGTTCACTGCGACGTGACAAAGGAAGAGGACGTTGAAAACTGCGTGAACACAGCGGTTTCCAAGTATGGAAAACTAGACATCATGCTTAATAACGCAGGTATATGTGATGAGATCAAAACAAGCATACTAGACAACAACAAGTCTGATTTTGAGAGTGTCATAAGCGTGAACTTGGTTGGTCCTTTTCTGGGAACAAAGCACGCTGCAAGAGTCATGATCCCTGCTAAAAGGGGAAGCATAATTAACACAGCTAGTGTTGCTGGAACCTTAGGTGGAGTGGCTACACATGCCTACACAAGTTCAAAGCACGCGCTAATTGGACTGATGAAAAACACTGCGGTGGAGCTTGGACAGTTTGGTATTCGGGTGAATTGTGTGTCCCCTTATGTGGTTCCCACACCGTTGACCAAGAAACATGCCAATATTGACGAAGAAGGAGTTCGTGAGATTTATTCCAACCTAAAAGGTGTTCATCTTGTGCCGAACGATGTGGCCGAAGCTGCTCTTTACTTGGCAGGTGATGAGTCTAAGTATGTTAGTGGTCACAATCTCGTGTTAGATGGTGGGTACACTGATGTAAATATAGGATTTTCTGTGTTTGATCAAAATAAACTTAACTAA 816 0.451 MASASAVSAHVRRLEGKVAIITGGASGIGEATARLFSKHGAHLVIADIQDDLGLSLCKHLESASYVHCDVTKEEDVENCVNTAVSKYGKLDIMLNNAGICDEIKTSILDNNKSDFESVISVNLVGPFLGTKHAARVMIPAKRGSIINTASVAGTLGGVATHAYTSSKHALIGLMKNTAVELGQFGIRVNCVSPYVVPTPLTKKHANIDEEGVREIYSNLKGVHLVPNDVAEAALYLAGDESKYVSGHNLVLDGGYTDVNIGFSVFDQNKLN* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0756 271 CDD secoisolariciresinol-DH_like_SDR_c 13 256 IPR045309 GO:0016616
Gso12g0756 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 256 IPR036291 -
Gso12g0756 271 PANTHER MOMILACTONE A SYNTHASE 7 262 - -
Gso12g0756 271 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Gso12g0756 271 Pfam Enoyl-(Acyl carrier protein) reductase 23 256 - -
Gso12g0756 271 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 262 - -
Gso12g0756 271 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Gso12g0756 271 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Gso12g0756 271 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Gso12g0756 271 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Gso12g0756 271 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Gso12g0756 271 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Gso12g0756 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Gso12g0756 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Gso12g0756 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Gso12g0756 271 Gene3D - 2 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0756 Gso-Chr12 7618852 7620041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0756 11 254 Acyl Lipid Metabolism Gene Families AT1G24360 30.677 7.19e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0756 - - gmx:100783169 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0756 12 7618852 7620041 Gso11g1358 11 15398133 15399690 GST