Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0755 ATGGCAACTGTTTCTGCGGTCTCAGCTCCTATTAGAAGGCTTGAGGGGAAAGTGGCGATTATCACTGGTGGTGCAAGCGGCATAGGTGAGGCCACTGCAAGACTCTTCTCTAAGCACGGAGCACACCTTGTCATAGCTGACATTCAAGACGATTTGGGCCTCTCTCTTTGCAAACACTTGGAATCCGCTTCCTATGTTCACTGCGACGTGACAAAGGAAGAGGACGTTGAAAACTGCGTGAACACAGCGGTTTCCAAGTATGGAAAACTAGACATCATGCTTAATAACGCAGGTATATGTGATGAGATCAAAACAAGCATACTAGACAACAACAAGTCTGATTTTGAGAGTGTCATAAGCGTGAACTTGGTTGGTCCTTTTCTGGGAACAAAGCACGCTGCAAGAGTCATGATCGCTGCTAAAAGGGGAAGCATAATTAACACAGCTAGTGTTGCTGGAATCTTAGGTGGAGTGGCTACACATGCCTACACAAGTTCAAAGCACGCGCTAATTGGACTGATGAAAAGCACTGCGGTGGAGCTTGGACAGTTTGGTATTCGGGTGAATTGTGTGTCCCCTTATGTGGTTCCCACACCGTTGACCAAGAAACATGCCAATATTGACGAAGAAGGAGTTCGTGAGATTTATTCCAACCTAAAAGGTGTTCATCTTGTGCCGAACGATGTGGCCGAAGCTGCTCTTTACTTGGCAGGTGATGAGTCTAAGTATGTTAGTGGTCACAATCTCGTGTTAGATGGTGGGTTTACTAATGTAAATATAGGATTTTCTGTGTTTGGACAGTCGGAGTAA 810 0.4556 MATVSAVSAPIRRLEGKVAIITGGASGIGEATARLFSKHGAHLVIADIQDDLGLSLCKHLESASYVHCDVTKEEDVENCVNTAVSKYGKLDIMLNNAGICDEIKTSILDNNKSDFESVISVNLVGPFLGTKHAARVMIAAKRGSIINTASVAGILGGVATHAYTSSKHALIGLMKSTAVELGQFGIRVNCVSPYVVPTPLTKKHANIDEEGVREIYSNLKGVHLVPNDVAEAALYLAGDESKYVSGHNLVLDGGFTNVNIGFSVFGQSE* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0755 269 CDD secoisolariciresinol-DH_like_SDR_c 13 256 IPR045309 GO:0016616
Gso12g0755 269 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Gso12g0755 269 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Gso12g0755 269 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Gso12g0755 269 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Gso12g0755 269 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Gso12g0755 269 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Gso12g0755 269 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 262 - -
Gso12g0755 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Gso12g0755 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Gso12g0755 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Gso12g0755 269 Pfam Enoyl-(Acyl carrier protein) reductase 23 256 - -
Gso12g0755 269 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Gso12g0755 269 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 257 IPR036291 -
Gso12g0755 269 Gene3D - 4 266 - -
Gso12g0755 269 PANTHER MOMILACTONE A SYNTHASE 7 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0755 Gso-Chr12 7615000 7616245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0755 3 256 Acyl Lipid Metabolism Gene Families AT3G55290 32.830 1.94e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0755 - - gmx:100783169 517.309