Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0632 ATGGCTTCCGAAAACCTTTTCCATTGTACTTCATTGGCTTTGCTTCTCTTATTTGGATTTTGGGCTTTCAGCGCCAATACTCGCACTCTCGAAGATGCTTCAATGCATGAGAGGCACGAGCAGTGGATGGCTCAGCATGGAAAGGTCTATAAGGACCATCATGAGAAGGAGTTGAGATACAAAATATTTCAGCAAAACGTGAAAGGCATAGAAGGCTTTAACAATGCGGGAAACAAATCTCACAAGCTTGGTGTCAATCAGTTTGCTGATCTCACAGAAGAGGAATTCAAAGCCATAAATAAACTCAAGGGTTATATGTGGTCTAAAATATCAAGAACATTCTCGTTTAAATATGAACATGTGACAAAAGTACCAGCAACACTGGATTGGAGACAAAAAGGAGCTGTCACGCCCATCAAGAGCCAAGGCCTCAAGTGTGGATCATGTTGGGCATTTGCTGCTGTGGCAGCAACAGAAGGAATCACCAAGCTGACTACTGGTGAATTGATCTCTTTATCAGAACAAGAACTTATTGATTGTGACACAAACGGTGATAATGGGGGTTGTAAATGGGGCATAATACAAGAAGCCTTCAAATTTATCGTGCAAAATAAAGGACTTGCCACAGAAGCATCTTACCCTTATCAAGCTGTTGATGGGACTTGCAATGCAAAAGTAGAATCCAAACATGTGGCTAGCATTAAGGGGTACGAGGATGTTCCTGCCAACAATGAGACTGCACTTCTCAATGCTGTTGCGAATCAACCAGTTTCTGCACTTGTTGATTCAAGTGATTATGATTTTCGATTTTATTCAAGTGGTGTCCTCAGTGGATCCTGTGGCACTACATTTGATCACGCTGTCACTGTTGTGGGGTATGGAGTAAGTGATGATGGAACCAAGTATTGGTTGATCAAGAATTCATGGGGAGTATACTGGGGTGAACAAGGATACATCAGGATAAAAAGAGATGTTGCTGCTAAAGAAGGCATGTGTGGCATAGCAATGCAAGCTTCTTACCCCATTGCATAA 1032 0.4205 MASENLFHCTSLALLLLFGFWAFSANTRTLEDASMHERHEQWMAQHGKVYKDHHEKELRYKIFQQNVKGIEGFNNAGNKSHKLGVNQFADLTEEEFKAINKLKGYMWSKISRTFSFKYEHVTKVPATLDWRQKGAVTPIKSQGLKCGSCWAFAAVAATEGITKLTTGELISLSEQELIDCDTNGDNGGCKWGIIQEAFKFIVQNKGLATEASYPYQAVDGTCNAKVESKHVASIKGYEDVPANNETALLNAVANQPVSALVDSSDYDFRFYSSGVLSGSCGTTFDHAVTVVGYGVSDDGTKYWLIKNSWGVYWGEQGYIRIKRDVAAKEGMCGIAMQASYPIA* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0632 343 SMART Inhibitor_I29_2 39 96 IPR013201 -
Gso12g0632 343 SMART pept_c1 124 342 IPR000668 GO:0006508|GO:0008234
Gso12g0632 343 Pfam Papain family cysteine protease 124 342 IPR000668 GO:0006508|GO:0008234
Gso12g0632 343 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Gso12g0632 343 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Gso12g0632 343 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Gso12g0632 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
Gso12g0632 343 SUPERFAMILY Cysteine proteinases 32 342 IPR038765 -
Gso12g0632 343 CDD Peptidase_C1A 125 341 IPR039417 -
Gso12g0632 343 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Gso12g0632 343 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 22 342 - -
Gso12g0632 343 Gene3D Cysteine proteinases 22 343 - -
Gso12g0632 343 PANTHER - 22 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0632 Gso-Chr12 5966996 5968613 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0632 - - gmx:100816790 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0632 12 5966996 5968613 Gso11g1497 11 17456756 17458635 GST