Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0585 ATGTTATCCTTTGGTAGAAATTGCTGCTTCAAATATCCTGGTACCTACTTCAGGAGGAGGAATGCCTCAAATCATACTAATACTATACTCTCCACAAACTCATTTTGCCCCAAATTTCCTGACCCCAATTACCCTTTTGGAAAAAATCCACGGAGTACTCATTTCTTTCACCATGCCCACAAACTTGACCTCTTTTTATTCCAAATCAACACTAGTTACACTCAATTTCCCATCCCATTTGCACCCTTTAATTCTCACTATTCAACGAAGGCTCCTTCAAGATCTTACCAAAGACGAGCTCGAAAGAGGTTGTTAAAGTCCTCCAAGCCTACACTAGACCAAGCCCAATTTCAGCTGGCTCTGTCCCAACTTCCCCCGAGGTTCACTCCTGAAGAACTCTGCAATGTGATTGCTCGACAAAATGACCCTTTAGTTTGCTTAGAATTGTTTCACTGGGCGTCTCAGCAGCCCCGCTTTCGACACGATGTGTCCACGTTTCATATCACCATAAAGAAGCTTGGCGCTGCAAAGATGTACCAAGAAATGGATGATATTGTGAACCAACTGCTTGCAGTTCCTTTAATTGGTTCAGAGGCATTGTTCAACATGGTTATATATTATTTCACTCAGGCACGGAAATTGACTAGAGCTGTCAATGTGTTTAAGCACATGAAAAGTAGAAGAAATTTGAATTGCTTTTTTAGGCCTTCTATCAGGACATATAATATTCTTTTTGCCGCATTTTTGGGTAGAGGGAGCAACTCTTATATAAACCATGTGTATATGGAAACAATTAGGTGTTTGTTCAGGCAAATGGTCAAGGATGGCATTAAGCCTGATATTTTTTCATTGAATTCTATGATCAAAGGATATGTGCTATCTCTTCATGTTAATGATGCGTTGAGGATATTTCATCAGATGGGTGTGATCTATGATTGCCCGCCCAACGCACTAACATACGATTGCTTGATTCACGGTTTGTGTGCCCAAGGCAGAACAAATAATGCTAAAGAATTGTATTCTGAAATGAAGACGAAAGGTTTTGTTCCTAGTAGTAAATCTTATAATTCGCTTGTCAATTCTTTGGCACTTGGTGGAGAGATTGAGGAGGCAGTAAATTATCTGTGGGAGATGACTGATAAGCAAAGGTCAGCTGATTTTATTACATATAAGACTGTACTGGATGAGATATGTAGACGAGGAACAGTTCAGGAGGGCACGAGGTTTTTGCAGGAGTTGCAAGAAAAGGACCTTGTAGACGGGCATGCTTATAGGAAGCTTCTATATGTGCTTGAAGATGACTATGGGAATTCAGTGAGCAGAATTGATTCAGATGCCGCCTTCTTGGTCAGCACAGAAAATTGA 1365 0.4059 MLSFGRNCCFKYPGTYFRRRNASNHTNTILSTNSFCPKFPDPNYPFGKNPRSTHFFHHAHKLDLFLFQINTSYTQFPIPFAPFNSHYSTKAPSRSYQRRARKRLLKSSKPTLDQAQFQLALSQLPPRFTPEELCNVIARQNDPLVCLELFHWASQQPRFRHDVSTFHITIKKLGAAKMYQEMDDIVNQLLAVPLIGSEALFNMVIYYFTQARKLTRAVNVFKHMKSRRNLNCFFRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVKDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVIYDCPPNALTYDCLIHGLCAQGRTNNAKELYSEMKTKGFVPSSKSYNSLVNSLALGGEIEEAVNYLWEMTDKQRSADFITYKTVLDEICRRGTVQEGTRFLQELQEKDLVDGHAYRKLLYVLEDDYGNSVSRIDSDAAFLVSTEN* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0585 454 Pfam PPR repeat 283 307 IPR002885 -
Gso12g0585 454 Pfam PPR repeat 201 227 IPR002885 -
Gso12g0585 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Gso12g0585 454 TIGRFAM PPR: pentatricopeptide repeat domain 319 351 IPR002885 -
Gso12g0585 454 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Gso12g0585 454 PANTHER ATPASE EXPRESSION PROTEIN 3 3 444 - -
Gso12g0585 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Gso12g0585 454 Gene3D Tetratricopeptide repeat domain 98 252 IPR011990 GO:0005515
Gso12g0585 454 Gene3D Tetratricopeptide repeat domain 346 419 IPR011990 GO:0005515
Gso12g0585 454 Gene3D Tetratricopeptide repeat domain 253 345 IPR011990 GO:0005515
Gso12g0585 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Gso12g0585 454 Pfam PPR repeat family 315 363 IPR002885 -
Gso12g0585 454 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 3 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0585 Gso-Chr12 5273842 5278019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0585 181 418 Glycosyltransferase AT1G05670 29.832 1.28e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0585 - - gmx:102666460 906.746