Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0583 ATGCATAGGATCAGCACCGCAGGGTACATTTTTTCTGCAGTTTTCAGAAGGAAATCTCAGCCTCACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGATACAGTTTAAGGAAAGTGTTGCTCAATTTGCAACAGAAAATATTGCCCCTCATGCTTCCAAAATAGACCACACAAATTATTTCCCAAAGGAGGTGAACTTATGGAAAAGCATGGGAGAATTTAATCTCCTTGGGATTACTGCACCAGAGGAATATGGAGGGCTTGGCCTAGGTTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGGTTCTGTTGGTCTTTCTTATGGTGCTCATTCAAACTTGTGTATCAATCAGCTGGTGAGGAATGGAAGCCCTGTTCAGAAAGAGAAATATTTACCAAAGCTTATTTCTGGGGATCATGTGGGAGCATTGGCAATGAGCGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCTGGGCTGGATCTGGAGAGACTTGTTTTGGCAGCTGGTCCTCTTGGTATTATGCAGGCATGTCTTGATGTTGTCCTTCCTTATGTTCGACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGGGGAAAATTGCTGACATGTATACTTCATTACAGTCCTCAAGGTCTTATGTGTATTCAGTAGCTCGGGACTGCGACAACGGAAAAATTGACCCAAAGGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCTTTGCAGGCTATACAATGTTTAGGTGGGAATGGTTATGTAAATGAATATCCCACTGGTCGTCTCTTGAGAGATGCCAAACTCTACGAGATTGGTGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGTGAGCTCTTCAAGGAGTAA 1230 0.4358 MHRISTAGYIFSAVFRRKSQPHSAAFSTSLLFDETQIQFKESVAQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSPVQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMPGFNTAQKLDKLGMRGSDTCELVFENCFVPDENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKIADMYTSLQSSRSYVYSVARDCDNGKIDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKE* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0583 409 Pfam Acyl-CoA dehydrogenase, C-terminal domain 258 406 IPR009075 GO:0016627
Gso12g0583 409 Pfam Acyl-CoA dehydrogenase, N-terminal domain 34 147 IPR013786 GO:0016627|GO:0050660
Gso12g0583 409 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 256 408 IPR036250 GO:0016627
Gso12g0583 409 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 153 165 IPR006089 GO:0003995
Gso12g0583 409 Gene3D - 263 406 - -
Gso12g0583 409 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 26 269 IPR009100 GO:0016627
Gso12g0583 409 Gene3D - 22 148 IPR037069 GO:0016627|GO:0050660
Gso12g0583 409 PANTHER 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL 9 408 - -
Gso12g0583 409 PIRSF PIGM 28 122 - -
Gso12g0583 409 PIRSF PIGM 159 409 - -
Gso12g0583 409 Gene3D - 150 262 IPR046373 GO:0016627
Gso12g0583 409 Pfam Acyl-CoA dehydrogenase, middle domain 151 246 IPR006091 GO:0016627
Gso12g0583 409 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 365 384 IPR006089 GO:0003995
Gso12g0583 409 CDD IVD 32 408 IPR034183 GO:0003995
Gso12g0583 409 PANTHER ACYL-COA DEHYDROGENASE 9 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0583 Gso-Chr12 5241458 5254553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0583 33 409 Acyl Lipid Metabolism Gene Families AT3G45300 88.329 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0583 K00253 - gmx:100784046 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0583 12 5241458 5254553 Gso11g1261 11 11643716 11650425 GST