Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0562 ATGACGCAGGGGATGATAATCGCAATACAAGGATCAAGAAACATGGCAAGGAACAGATTTGAGAACAACAGGGACATCATAAGCACTATGCCTGACGATATCTTAGGGGATATTCTTTCTCGGTTGACATTGAAAGAAGCTGCTAGGACTAGCGTGCTTGCAACTAAATGGAGATATCACTGGACCTTTTTCTCTGGGCTCTTGGACTTTGATCATTCACTTCGGAACTTTCACTTGCGTCGAGAACATGTTGGAATCTTGACTAAGTGCAATGTTTTTGTTTATGAGTGGGAGAGGTTCATGACCCGTATGGCAAATGTGATGAAATCATTGAAAAGCTCCTCCCTCCAAGGACTCAGAATTTGCATGGATTTGGGTGACCCTTGGAGGGTAGCAGAATGGGTTAAGTATGCTGCTGAGAAGCATGTTCAAACGTTGGACCTGGATTTTTCATACCACTTCTCAGTACCATTTTATGAAATAAGTTTGACCATTGTTCATAATGTCTTTCCATCAAGGGGTTATGAAATGAAGTCATTGTGTAACCTGCGTTTGTCTTCTGTGGACGTGAGTGGTGAAGTCATTGAGGGTTTACTAGCATCTTGTCCATTGCTTGAATCAATATGTGTCATTGAATCAAAACGCCTTGTGCGCTTGAAAGTTAGGGGTGAAGCACTGAGGCTGAAGCATTTGGAGTTGGTTGAATGCCGCATTATGGATCTTGACATCTATGCTGTAAATCTAGTAACATTTAGGTACCAAGGAAAGTACGGGAAGTTTAAGTTTCAGAACGTTCCAAGTCTTGTGGAAGCTTCCTTTGGAGGAATCTTTTGTAGTTACCTGGAATCTGACATGGACCGTGTTGATTTTTATGGAGTGTTGTTGCAGATTAATGTTCTGAAATTGGAACTGTCCAAACCGTATCCGGGTTTTCTTGAAGGCCTGCCTGTGTTTGATAATGTGGGGCAGCTGGAAATTCGAATTCCTCACAGGAGTGGAGCGGCGCTTGATCATCATGTTTCTTTACTAAGTTCATTCCCTTCAGTACGCGTGCTTAAGATTAAGTTCCAAAGGAACGATCTAAGTGTAGTGGAGGAGAATTGGAAGGCCAATCTGGAACATGAGTATCCAAACCTGAGGGAGCTGGAAGTGTCAGGATTCAGAAGAGACCCCAGTCAAATGGAGTTGCTTATCAGCATATTTGAGAAGGCTCCTAATCTCAACAGTGTTGTTGTGGATCCCTTGTCTTCAATACATGTGGATAGGTCACCTGATGTCAAGGCCCGGTATAGAGAAATGAGGCGTGAGACCACCAAATGGCTTGCTGATGCTCTCAAACCACATCTGCCTCCTTTAACTCAGTTGATTGTCCTCTGA 1377 0.4321 MTQGMIIAIQGSRNMARNRFENNRDIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGLLDFDHSLRNFHLRREHVGILTKCNVFVYEWERFMTRMANVMKSLKSSSLQGLRICMDLGDPWRVAEWVKYAAEKHVQTLDLDFSYHFSVPFYEISLTIVHNVFPSRGYEMKSLCNLRLSSVDVSGEVIEGLLASCPLLESICVIESKRLVRLKVRGEALRLKHLELVECRIMDLDIYAVNLVTFRYQGKYGKFKFQNVPSLVEASFGGIFCSYLESDMDRVDFYGVLLQINVLKLELSKPYPGFLEGLPVFDNVGQLEIRIPHRSGAALDHHVSLLSSFPSVRVLKIKFQRNDLSVVEENWKANLEHEYPNLRELEVSGFRRDPSQMELLISIFEKAPNLNSVVVDPLSSIHVDRSPDVKARYREMRRETTKWLADALKPHLPPLTQLIVL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0562 458 PANTHER - 7 433 - -
Gso12g0562 458 SUPERFAMILY RNI-like 90 411 - -
Gso12g0562 458 SUPERFAMILY F-box domain 23 78 IPR036047 GO:0005515
Gso12g0562 458 PANTHER F-BOX PROTEIN-LIKE 7 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0562 Gso-Chr12 5048456 5058762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0562 25 352 EF-hand Containing Proteins AT5G41840 26.753 3.62e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0562 - - gmx:100778140 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0562 12 5048456 5058762 Gso11g1520 11 17711039 17712356 GST