Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso12g0554 | ATGAACTATCGCAGAGCCAAAACGATAAATCCAAACCCATTGATCCATTATGCCAATAATCGATCAATACCCCACACCCACAAACCTCGACCCCATGAAAGACCAACTCCAAAGTTCCGCAAGCGCATTCCCTTCGTCACCGAAGTCAAAACAGTGGAAGACCCGGAAGAAGCATTGTCCCTCTTTCACCGTTACAAAGAACAGGGTTTCCGGCACTATTACCCTTCCTATGCCGCATTACTCTACAAACTAGCTCGTTCTAGAATGTTCGATGCCGTTGAAACGATTCTCGCTCACATGAAAGACACCGAAATGCAATGCAGAGAGAGCGTTTTCATTGCCCTCTTTCAACATTACGGTCCCGAAAAAGCCGTTGAACTCTTCAACAGAATGCCTCAGTTCAATTGCACCCGCACGATACAGTCCTTCAACGCGCTTCTCAATGTTCTAATTGACAATGACAGGTTTGACGAGGCCAATGATATTTTTGGTAAATCCTATGAAATGGGTTTTCGTCCAAACACGGTCACGTTCAATATAATGGTGAAGGGGCGGTTGGCAAAGGGCGAGTGGGGGAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAACCGAGTGTTGTCACTTATAATAGTCTCATTGGGTTTTTGTGTAGGAAGGGTGATTTGGATAAAGCAATGGCCTTGCTCGAGGACATGGGCCAGAAAGGAAAGCATGCAAATGAAGTAACATATGCGCTGTTGATGGAGGGTTTGTGCTCTGTGGAGAAGACTGAGGAAGCTAAGAAGCTTATGTTTGATATGGCATATCGCGGGTGTAAAGCTCAGCCGGTGAATTTTGGTGTTTTGATGAATGATCTTGGTAAGAGAGGAAAGGTTGAAGAGGCCAAATCTTTGCTCCATGAGATGAAGAAAAGGCGGCTTAAGCCAGATGTTGTAACTTACAACATATTGATAAATTATCTTTGCAAGGAAGGTAAGGCAATGGAAGCTTACAAAGTCTTACTTGAGATGCAGATTGGGGGATGTGTGCCGAATGCAGCTACATACAGGATGGTGGTTGATGGTTTGTGCCAAATTGGGGATTTTGAGGTTGCTTTGAGTGTTTTGAATGCAATGCTTACTAGTAGACATTGTCCACGTTCGGAAACATTTAATTGTATGGTTGTTGGCTTGTTGAAATCTGGAAATATTGATGGTTCTTGCTTTGTTTTGGAAGAGATGGAGAAGAGAAAGCTAGAATTTGATTTGGAGAGCTGGGAAACTATAATAAAGTCTGCCTGTAGTGAGAATAAGGGTGCAAGTGAGCTCATGACTGTACTTACATCTCCGTGTATCTAA | 1350 | 0.4348 | MNYRRAKTINPNPLIHYANNRSIPHTHKPRPHERPTPKFRKRIPFVTEVKTVEDPEEALSLFHRYKEQGFRHYYPSYAALLYKLARSRMFDAVETILAHMKDTEMQCRESVFIALFQHYGPEKAVELFNRMPQFNCTRTIQSFNALLNVLIDNDRFDEANDIFGKSYEMGFRPNTVTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRHCPRSETFNCMVVGLLKSGNIDGSCFVLEEMEKRKLEFDLESWETIIKSACSENKGASELMTVLTSPCI* | 450 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso12g0554 | 449 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 139 | 173 | IPR002885 | - | |
| Gso12g0554 | 449 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 22 | 445 | - | - | |
| Gso12g0554 | 449 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 349 | 383 | IPR002885 | - | |
| Gso12g0554 | 449 | Gene3D | Tetratricopeptide repeat domain | 380 | 445 | IPR011990 | GO:0005515 | |
| Gso12g0554 | 449 | Gene3D | Tetratricopeptide repeat domain | 309 | 379 | IPR011990 | GO:0005515 | |
| Gso12g0554 | 449 | Gene3D | Tetratricopeptide repeat domain | 240 | 308 | IPR011990 | GO:0005515 | |
| Gso12g0554 | 449 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 174 | 208 | IPR002885 | - | |
| Gso12g0554 | 449 | Pfam | PPR repeat family | 208 | 257 | IPR002885 | - | |
| Gso12g0554 | 449 | Pfam | PPR repeat family | 140 | 184 | IPR002885 | - | |
| Gso12g0554 | 449 | Pfam | PPR repeat family | 313 | 362 | IPR002885 | - | |
| Gso12g0554 | 449 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 244 | 278 | IPR002885 | - | |
| Gso12g0554 | 449 | Gene3D | Tetratricopeptide repeat domain | 121 | 239 | IPR011990 | GO:0005515 | |
| Gso12g0554 | 449 | Gene3D | Tetratricopeptide repeat domain | 51 | 120 | IPR011990 | GO:0005515 | |
| Gso12g0554 | 449 | MobiDBLite | consensus disorder prediction | 23 | 37 | - | - | |
| Gso12g0554 | 449 | Pfam | PPR repeat | 283 | 310 | IPR002885 | - | |
| Gso12g0554 | 449 | Pfam | PPR repeat | 117 | 136 | IPR002885 | - | |
| Gso12g0554 | 449 | Pfam | PPR repeat | 387 | 415 | IPR002885 | - | |
| Gso12g0554 | 449 | TIGRFAM | PPR: pentatricopeptide repeat domain | 142 | 175 | IPR002885 | - | |
| Gso12g0554 | 449 | TIGRFAM | PPR: pentatricopeptide repeat domain | 316 | 350 | IPR002885 | - | |
| Gso12g0554 | 449 | TIGRFAM | PPR: pentatricopeptide repeat domain | 387 | 419 | IPR002885 | - | |
| Gso12g0554 | 449 | TIGRFAM | PPR: pentatricopeptide repeat domain | 176 | 209 | IPR002885 | - | |
| Gso12g0554 | 449 | TIGRFAM | PPR: pentatricopeptide repeat domain | 211 | 240 | IPR002885 | - | |
| Gso12g0554 | 449 | TIGRFAM | PPR: pentatricopeptide repeat domain | 352 | 383 | IPR002885 | - | |
| Gso12g0554 | 449 | TIGRFAM | PPR: pentatricopeptide repeat domain | 284 | 315 | IPR002885 | - | |
| Gso12g0554 | 449 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 384 | 418 | IPR002885 | - | |
| Gso12g0554 | 449 | PANTHER | OS05G0548600 PROTEIN | 22 | 445 | - | - | |
| Gso12g0554 | 449 | MobiDBLite | consensus disorder prediction | 14 | 38 | - | - | |
| Gso12g0554 | 449 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 279 | 313 | IPR002885 | - | |
| Gso12g0554 | 449 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 314 | 348 | IPR002885 | - | |
| Gso12g0554 | 449 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 209 | 243 | IPR002885 | - | |
| Gso12g0554 | 449 | SUPERFAMILY | TPR-like | 62 | 337 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso12g0554 | 122 | 435 | Miscellaneous Gene Families | AT4G11690 | 30.573 | 3.97e-45 | 163 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso12g0554 | - | - | gmx:100776556 | 914.45 |