Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0540 ATGGCACCTAAGGCAGAGAAGAAGCCAGCGGAGAAGAAGCCCGCGGAGGAGAAGAAGTCGACGGTGGGAGACAAGGCTCCGGCGGAGAAGAGGCCGAAGGCCGGAAAGAAGCTTCCGAAGGAGGGAGGAGCCGGCGGAGAAGGGGGGAAGAAGAAAAAGAGGAACAAGAAGAGCGTGGAGACGTACAAGATATACATATTCAAGGTACTGAAGCAGGTCCACCCTGACATTGGTATCTCAAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCTTCCAGACTTGCCCGCTACAACAAGAAGCCCACCATCACTTCAAGGGAAATCCAGACCGCGGTCAGGCTTGTGCTTCCCGGTGAATTGGCCAAGCACGCCGTTTCTGAGGGTACCAAGGCCGTCACCAAGTTCACCAGCTCATGA 450 0.5444 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKRPKAGKKLPKEGGAGGEGGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0540 149 PRINTS Histone H2B signature 62 80 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0540 149 PRINTS Histone H2B signature 81 101 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0540 149 PRINTS Histone H2B signature 103 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0540 149 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0540 149 PRINTS Histone H2B signature 133 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0540 149 PANTHER HISTONE H2B 5 149 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0540 149 ProSitePatterns Histone H2B signature. 117 139 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0540 149 SMART h2b3 52 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0540 149 PANTHER HISTONE H2B.1-RELATED 5 149 - -
Gso12g0540 149 Pfam Core histone H2A/H2B/H3/H4 4 125 IPR007125 GO:0003677
Gso12g0540 149 SUPERFAMILY Histone-fold 35 149 IPR009072 GO:0046982
Gso12g0540 149 MobiDBLite consensus disorder prediction 1 49 - -
Gso12g0540 149 MobiDBLite consensus disorder prediction 1 55 - -
Gso12g0540 149 Gene3D Histone, subunit A 20 149 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0540 Gso-Chr12 4831900 4832635 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0540 K11252 - gmx:100778668 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0540 12 4831900 4832635 Gso11g1202 11 10854230 10854987 GST