Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0489 ATGGCTGAGCCAAACATTGCTAGCAGATGGTCTTTACAGGGGATGACAGCTCTCGTCACCGGTGGATCCAAAGGAATCGGATATGCTATCGTGGAGGAGTTGGCACAGCTTGGAGCCACTGTGCACACTTGCGCTCGGAACGAAGCTGAACTCAATGAATCCTTAAATGAATGGAACACAAAAGGATACAGAGTAACTGGTTCCGTCTGTGACGTGGCGTCTCGTGCAGAAAGACAAGACCTCATTGCTAGACTCTCCTCTGAGTTTAATGGCAAACTCAATATACTTGTAAACAACGTGGGAACAAACATATGGAAAGACCTCTTGGAATACACAGAGGAAGACTTTTTATTTCTGGTGAATACGAATTTGCAATCTGCTTTCCACCTATGCCAGCTTGCACATCCTCTCCTAAAAGCCTCCGAAGCTGCAAGCATCGTTTTCATATCCTCCATTGGAGGTGTGGTATCAATAAATTTAGGATCCGTTGTATATAGTGCAACAAAAGGAGCAATGAATCAAATGACAAAAAATTTGGCATGTGAATGGGCCAAAGACAATATAAGGACTAATTGCGTTGCACCAGGAATGATCAGAACCCCTGCTGCTGATGAGTATTTAAAAGAGGGAAAAATTGCTAATGCATACATTCCACGAACCCCTCTTGGACGGTTCGGAGAAGGAGACGAGGTGTCTTCGGTTGTGGCATTCCTCTGCTTACCCGCAGCCTCTTACGTAACTGGACAGATAATTTGTGTTGATGGCGGCTTCACTGTCAACGGCCTATACATAAGCTAG 798 0.4499 MAEPNIASRWSLQGMTALVTGGSKGIGYAIVEELAQLGATVHTCARNEAELNESLNEWNTKGYRVTGSVCDVASRAERQDLIARLSSEFNGKLNILVNNVGTNIWKDLLEYTEEDFLFLVNTNLQSAFHLCQLAHPLLKASEAASIVFISSIGGVVSINLGSVVYSATKGAMNQMTKNLACEWAKDNIRTNCVAPGMIRTPAADEYLKEGKIANAYIPRTPLGRFGEGDEVSSVVAFLCLPAASYVTGQIICVDGGFTVNGLYIS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0489 265 Gene3D - 2 263 - -
Gso12g0489 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 260 IPR036291 -
Gso12g0489 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Gso12g0489 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Gso12g0489 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Gso12g0489 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
Gso12g0489 265 PANTHER TROPINONE REDUCTASE 7 263 IPR045000 GO:0016491
Gso12g0489 265 Pfam Enoyl-(Acyl carrier protein) reductase 23 258 - -
Gso12g0489 265 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Gso12g0489 265 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Gso12g0489 265 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Gso12g0489 265 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Gso12g0489 265 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Gso12g0489 265 PRINTS Glucose/ribitol dehydrogenase family signature 221 241 IPR002347 -
Gso12g0489 265 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 7 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0489 Gso-Chr12 4343615 4345776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0489 9 262 Miscellaneous Gene Families AT2G29290 62.992 5.81e-116 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0489 K08081 - gmx:100787037 529.25