Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0476 ATGGCACGCACTCTAACACTAACACCTATCTCTTTCACTCTCGCTAAAACCCTAAACCCCATTTTCCCATTCCACAACACTCTTCCCTTCTCCTCTTCAATCCTTTCTCGCCAGAAGCTCACTCGCCGGAGCCTATCCCGCTCCGTCCTCCGTCCAACCGCCGGCGAATTTTCCGGCAGCGTCGACGACGATGAAGAATCGGGCGAATTGGACGACCTCGATCTCGTCGCCCTCGAGCAAGAAGCCAAGGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTGAAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCACGCAGGAAGAGTCCACGTAGAACAAAAATTATTCCTGACAATCTTCTCCCAAGGGTTGCAATTGTTGGAAGGCCAAATGTTGGCAAATCAGCATTATTTAATCGTCTTGTTGGGGGAAACAGGGCAATTGTGGTGGATGAACCTGGGGTCACCAGGGATCGTTTGTATGGTCGATCGTATTGGGGAGAGCATGAATTCATGGTAGTCGACACAGGTGGGGTTATCACCGTTTCAAAATCACAAGCTACTGTTATGGAAGAGTTGGCTATTACTACTACCATTGGTATGGATGGCATTCCACTTGCTGTTAGAGAGGCAGCTGTTGCCAGGATGCCCTCAATGATTGAGAGACAAGCAACTGCAGCTGTGGAAGAATCATCTGTGATTATTTTTCTGGTTGATGGTCAGGCCGGTCTAACAGCAGCAGACGAGGAAATTGCTGATTGGCTACGTAAAAACTACTCAGATAAATATGTCATTCTTGCAGTTAACAAGTGTGAATCTCCACGCAAAAGAATTATGCAGGCATCTGAATTTTGGTCCCTTGGATTTGAACCACTTCCAATATCAGCTATCTCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGCCTACAGAAAATTGAGAAGTTCCAACTTATTGATACTGCTGGAATCAGGAAAAGAACAGCCATTGCTTCAGCTGGGAGTACAACAGAGGCTTTATCAGTGAATCGAGCATTTCGTGCTATTCGTCGTTCTGATGTTGTTGCTCTTGTCATCGAGGCCATGGCTTGTATCACAGAACAGGACTACAAGATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCATCATACTATGAGCAAGATGTCAGGGAGAAGCTTCGCTCACTTGTCTGGGCTCCAATTGTTTATTCTACTGCTGTAGCTGGTCATAGTGTTGACAAGATTATTGTTGCTGCTATTGAAGTTGAAAAGGAGAGATCAAGAAGACTTGGGACTTCTATATTGAATCAAGTAGTTCAGGAAGCAGTAGGTTTTAAGCCTCCTCCCAGGACACGCGGTGGAAAAAGAGGGCGTGTTTACTATTGCACTCAGGCTGCTATAAGGCCACCTACATTTGTGTTCTTCGTCAATGATGCAAAACTTTTTCCTGAGACTTACCGGCGCTATATGGAGAAGCAACTGCGTACAGATGCAGGTTTTTCTGGTACACCCATTCGACTTCTCTGGCGCAGCAGAAGGAAAATGGGAAAAGATGAAGGCAAACCTGTAACAAAGACCCGAGAAAATCTTACATCAAATGATCGAAAATTGGTGTCAACTACACCATAG 1719 0.4526 MARTLTLTPISFTLAKTLNPIFPFHNTLPFSSSILSRQKLTRRSLSRSVLRPTAGEFSGSVDDDEESGELDDLDLVALEQEAKDAVEAYSSSLSQILSIEDEEKSDRKESAQSRRKSPRRTKIIPDNLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGEHEFMVVDTGGVITVSKSQATVMEELAITTTIGMDGIPLAVREAAVARMPSMIERQATAAVEESSVIIFLVDGQAGLTAADEEIADWLRKNYSDKYVILAVNKCESPRKRIMQASEFWSLGFEPLPISAISGTGTGELLDLVCSGLQKIEKFQLIDTAGIRKRTAIASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIEKEGKGCVIVVNKWDTIPNKNQQTASYYEQDVREKLRSLVWAPIVYSTAVAGHSVDKIIVAAIEVEKERSRRLGTSILNQVVQEAVGFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFPETYRRYMEKQLRTDAGFSGTPIRLLWRSRRKMGKDEGKPVTKTRENLTSNDRKLVSTTP* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0476 572 Pfam 50S ribosome-binding GTPase 325 400 IPR006073 GO:0005525
Gso12g0476 572 Pfam 50S ribosome-binding GTPase 131 278 IPR006073 GO:0005525
Gso12g0476 572 PANTHER GTP-BINDING PROTEIN 107 324 - -
Gso12g0476 572 PANTHER GTP-BINDING PROTEIN 325 549 - -
Gso12g0476 572 ProSiteProfiles EngA-type guanine nucleotide-binding (G) domain profile. 130 325 IPR031166 GO:0005525
Gso12g0476 572 Hamap GTPase Der [der]. 129 543 IPR016484 GO:0005525
Gso12g0476 572 MobiDBLite consensus disorder prediction 541 562 - -
Gso12g0476 572 MobiDBLite consensus disorder prediction 541 572 - -
Gso12g0476 572 PANTHER GTPASE DER 325 549 - -
Gso12g0476 572 PANTHER GTPASE DER 107 324 - -
Gso12g0476 572 MobiDBLite consensus disorder prediction 100 122 - -
Gso12g0476 572 Gene3D - 323 457 IPR027417 -
Gso12g0476 572 Gene3D - 127 322 IPR027417 -
Gso12g0476 572 PRINTS GTP1/OBG GTP-binding protein family signature 132 152 IPR006073 GO:0005525
Gso12g0476 572 PRINTS GTP1/OBG GTP-binding protein family signature 229 247 IPR006073 GO:0005525
Gso12g0476 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 320 IPR027417 -
Gso12g0476 572 Gene3D - 459 543 IPR015946 -
Gso12g0476 572 Pfam KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 459 540 IPR032859 -
Gso12g0476 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 546 IPR027417 -
Gso12g0476 572 CDD EngA1 133 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0476 Gso-Chr12 4241081 4247064 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0476 - - gmx:100777588 1019.99