Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0459 ATGGCTCGTACGAAGCAAACCGCAAGGAAGTCCACCGGAGGAAAAGCTCCGAGGAAGCAACTCGCCACGAAAGCAGCACGCAAGTCCGCTCCGGCGACCGGCGGCGTGAAGAAGCCACACCGTTTCAGGCCGGGTACGGTGGCGCTGAGGGAGATCCGAAAATACCAGAAGAGCACCGAGCTTCTCATAAGGAAGCTTCCTTTCCAGAGACTCGTAAGGGAAATCGCTCAGGACTTCAAGACCGATCTCCGCTTCCAGAGCAGCGCTGTCTCCGCTCTGCAGGAAGCCGCGGAGGCCTACCTTGTTGGGCTGTTCGAGGACACCAACCTCTGCGCCATTCACGCCAAGAGAGTTACCATTATGCCCAAGGACATTCAGCTTGCTCGTAGGATTAGGGGCGAGAGGGCTTAG 411 0.5791 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0459 136 ProSitePatterns Histone H3 signature 2. 67 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 SUPERFAMILY Histone-fold 2 133 IPR009072 GO:0046982
Gso12g0459 136 PANTHER HISTONE H3 1 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 MobiDBLite consensus disorder prediction 1 43 - -
Gso12g0459 136 Gene3D Histone, subunit A 2 136 IPR009072 GO:0046982
Gso12g0459 136 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 PRINTS Histone H3 signature 58 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 PRINTS Histone H3 signature 80 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 PRINTS Histone H3 signature 98 114 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 PRINTS Histone H3 signature 114 135 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 PANTHER - 1 136 - -
Gso12g0459 136 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 SMART h35 34 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
Gso12g0459 136 Pfam Core histone H2A/H2B/H3/H4 1 132 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0459 Gso-Chr12 4041155 4041822 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0459 K11253 - pda:103704350 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0459 12 4041155 4041822 Gso11g1115 11 10008163 10008876 GST
Gso15g0287 15 2620227 2620900 Gso12g0459 12 4041155 4041822 PCT
Gso11g3519 11 51030611 51031448 Gso12g0459 12 4041155 4041822 PCT
Gso12g0459 12 4041155 4041822 Gso15g0287 15 2620227 2620900 PCT
Gso12g0459 12 4041155 4041822 Gso11g3519 11 51030611 51031448 PCT