Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0452 ATGGCATTGAATTTGAGCATGTTACCATTGCTCTGCGTTTTGTCTCTTTTTGTTACCTCGGCCATCACAATTACTCTTTCCAAGAGCGTTGCACCCATTCATGACGTTTCTTATCTCAACCGGAGCAGTTTCCCGCAAGGCTTTATTTTCGGGTCAGCATCCTCAGCATATCAGTATGAAGGTGCTGCAAGGGAAGGTGGAAAAGGACCGAGTATATGGGATACTTTCACTCATAAATACCCAGAAAAAATAAAAGATGGAAGTAATGGAGATGTAGCGGACGACTCATATCATCGGTATAAGGAGGATATTGGAATCATGAAGTATATGAATTTGGATGCTTATAGATTTTCCATTTCATGGTCTAGGGTACTACCGAAAGGAAAGCTTAGTGCAGGTGTAAATCATGAAGGAGTAAACTACTACAACAACCTCATCAATGAGCTCATGGCTAATGGTCTGCAACCATATGTGACCCTTTTCCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGTGGTTTTTTAAGTCCTCACATTGTAGATGATTTTAGGGACTATGCTGAACTTTGCTTCAAGGAATTTGGCAATAGGGTGAAACATTGGATTACTTTGAATGAACCGAGGAGTGTGAGCAAGAATGGCTATGCAAATGGCAGGTTTGCACCTGGTCGGTGTTCTGATTGGCTAAAACTGAATTGCACAGGTGGTGATTCCGGAACTGAGCCCTATTTGACTTCGCACAACCAACTTCTTGCTCATGCTGCAGCAGCCAAACTGTATAAGACCAAGTATCAGACATCTCAAAAGGGTTTAATAGGGATTACCTTGAATTCTGACTGGTATGTGCCGGTTTCTAAAGAGAAATCTGATCAAGACGCTGCACGTAGGGGCCTTGACTTCATGTTTGGATGGTATATGGACCCACTCACAAAAGGTGAGTATCCAAAAACCATGCGATCTATGTTGGGAAACCGGCTACCAGAGTTCTCCAAAGAAGAAGCCAGGCAACTAAAAGGATCATTTGATTTTCTGGGCCTAAACTACTACTCATCCTTTTATGCTGCCCATGCACCCCACCAACGTGGTGCCAGACCAACCTTACAAACTGATGCTCTTGTTAATGTTACAAATCACCATGACGGCAAGCCCCTTGGTCCAATGGCTGCTTCTAACTGGTTGTGCATTTATCCACGAGGATTCCGGCAACTGTTGCTTTTCATCAAGAAGCAATACAACAACCCCTTAATTTACATTACTGAAAATGGTTATGACGAGTTCAACGATCCAACACTATCACTTGAAGAAAGCCTTTTAGATACTTACAGAGTCGATTACTTATATCGTCATCTTTATTATCTTCAAACTGCAATCAAGGATGGCGTGAATGTAAAGGGATATTTTGTATGGTCATTGCTGGATAATTTGGAGTGGAACTCTGGCTATACTGTGCGATTTGGACTCGTCTTCGTGAATTTCAGGGATGGCTTGAAAAGATACCCAAAACTCTCGGCACATTGGTTCAAGAATTTCCTCACTAAATCTTAG 1551 0.4236 MALNLSMLPLLCVLSLFVTSAITITLSKSVAPIHDVSYLNRSSFPQGFIFGSASSAYQYEGAAREGGKGPSIWDTFTHKYPEKIKDGSNGDVADDSYHRYKEDIGIMKYMNLDAYRFSISWSRVLPKGKLSAGVNHEGVNYYNNLINELMANGLQPYVTLFHWDVPQALEDEYGGFLSPHIVDDFRDYAELCFKEFGNRVKHWITLNEPRSVSKNGYANGRFAPGRCSDWLKLNCTGGDSGTEPYLTSHNQLLAHAAAAKLYKTKYQTSQKGLIGITLNSDWYVPVSKEKSDQDAARRGLDFMFGWYMDPLTKGEYPKTMRSMLGNRLPEFSKEEARQLKGSFDFLGLNYYSSFYAAHAPHQRGARPTLQTDALVNVTNHHDGKPLGPMAASNWLCIYPRGFRQLLLFIKKQYNNPLIYITENGYDEFNDPTLSLEESLLDTYRVDYLYRHLYYLQTAIKDGVNVKGYFVWSLLDNLEWNSGYTVRFGLVFVNFRDGLKRYPKLSAHWFKNFLTKS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0452 516 SUPERFAMILY (Trans)glycosidases 32 514 IPR017853 -
Gso12g0452 516 PRINTS Glycosyl hydrolase family 1 signature 342 356 IPR001360 GO:0004553|GO:0005975
Gso12g0452 516 PRINTS Glycosyl hydrolase family 1 signature 418 426 IPR001360 GO:0004553|GO:0005975
Gso12g0452 516 PRINTS Glycosyl hydrolase family 1 signature 441 452 IPR001360 GO:0004553|GO:0005975
Gso12g0452 516 PRINTS Glycosyl hydrolase family 1 signature 462 479 IPR001360 GO:0004553|GO:0005975
Gso12g0452 516 PRINTS Glycosyl hydrolase family 1 signature 486 498 IPR001360 GO:0004553|GO:0005975
Gso12g0452 516 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 48 62 IPR033132 -
Gso12g0452 516 Pfam Glycosyl hydrolase family 1 42 515 IPR001360 GO:0004553|GO:0005975
Gso12g0452 516 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 31 515 - -
Gso12g0452 516 PANTHER GLYCOSYL HYDROLASE 31 515 IPR001360 GO:0004553|GO:0005975
Gso12g0452 516 Gene3D Glycosidases 28 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0452 Gso-Chr12 3976159 3981220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0452 11 515 Glycoside Hydrolase AT5G44640 52.964 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0452 - K01188 gmx:100801874 1053.12