LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g0448	ATGGCATGCAATGGATTCTGCCTCAGACTCATTGCTTTAGTTCTTGTGATTAGCATATCAAGTGTTAATTGCATAGAAACTGATGCAGTTGAACCCATTATTGATATTGCTTCGCTGAATCGAGATAGTTTCCCACCAGACTTCATCTTTGGGGCTGGGTCGTCATCATACCAGTTTGAAGGTGCAGCAAATGAGGGTGGTAGGGGACTAAGTATATGGGATACCTTCACCCATAAATATCCAGAAAAGATACAGGACAAAAGCAATGGAGATGTTGCCATTGATGCTTATCATCGTTACAAGGAAGATGTTAAGATTGTGAAGGATATGAACTTGGATTCATATAGATTCTCGATTTCTTGGTCCAGAATACTACCAAAAGGAAAACTAAGTAGAGGTATAAATCAAGAAGGAATAGACTATTACAACAATCTCATCAACGAACTAGTGGCTAATGGTATACAACCATTGGTAACGCTTTTTCATTGGGATCTTCCTCAATCTTTAGAAGATGAATATGGTGGCTTCTTAAGTCCTCGCATAGTTAAAGATTTTCGAGATTACGCGGAACTTTGCTTCAAGGAATTTGGAGATAGAGTTAAGTATTGGGTTACTTTAAACGAGCCATGGAGTTATAGTCAGCATGGTTATGCAAATGGGGGAATGGCACCGGGTCGTTGTTCTGCTTGGGTAAATCCAAATTGCACTGGGGGTGATTCTGGTACGGAGCCTTATTTAGTTACGCACTACCAGTTACTTGCTCATGCAGCTGCTGTTCGTGTATACAAGACCAAGTATCAGGTATCACAAAAGGGTTTGATAGGCATTACCTTAGTAGCTAATTGGTACCTACCATTCTCGAATACCAAAGCTGATCAAAAGGCGACTGAAAGAGCAATTGACTTCATGTTTGGATGGTTTATGGATCCACTAACATCTGGAGACTATCCAAAAATCATGCGATCTCTTGTGAGAACACGATTGCCAAAGTTTACTACAGAGCAATCTAAACTACTTATTGGCTCATTTGATTTTATTGGCCTAAATTACTATTCTTCAACCTATGCCTCTGATGCACCTCATCTAAGTAATGCTAGACCTAACTATGTAACAGATTCTTTGGTCACCCCTGAATTTGAGCGTGATGGGAAACCCATAGGTATAAAGATTGCTTCTGATTGGTTGTATGTTTGTCCAAGAGGAATTCTTGATCTTCTATTATATACGAAGGAAAAGTATAATAATCCTTTGATTTACATTACTGAAAATGGTATAAATGAATTTAGAGACGAAACAATATCATTAGAGGAATCTCTTTTAGATACATTTAGAATTGATTATCATTATCGTCATCTTTTTTATCTTCGATCAGCAATTAGGCATGGTGTGAATGTGAAGGGATATTACATATGGTCTTTATTCGACAATTTTGAGTGGTCTTCCGGTTATACGGTGCGATTTGGAATGATTTTGGTGGATTATAAAAATAATTTGAAAAGATATCATAAACTCTCTGCAATATGGATCAAGAATTTTTTGAAGAAAACTAGCCTTTATGATTCTAGCATATGA	1572	0.374	MACNGFCLRLIALVLVISISSVNCIETDAVEPIIDIASLNRDSFPPDFIFGAGSSSYQFEGAANEGGRGLSIWDTFTHKYPEKIQDKSNGDVAIDAYHRYKEDVKIVKDMNLDSYRFSISWSRILPKGKLSRGINQEGIDYYNNLINELVANGIQPLVTLFHWDLPQSLEDEYGGFLSPRIVKDFRDYAELCFKEFGDRVKYWVTLNEPWSYSQHGYANGGMAPGRCSAWVNPNCTGGDSGTEPYLVTHYQLLAHAAAVRVYKTKYQVSQKGLIGITLVANWYLPFSNTKADQKATERAIDFMFGWFMDPLTSGDYPKIMRSLVRTRLPKFTTEQSKLLIGSFDFIGLNYYSSTYASDAPHLSNARPNYVTDSLVTPEFERDGKPIGIKIASDWLYVCPRGILDLLLYTKEKYNNPLIYITENGINEFRDETISLEESLLDTFRIDYHYRHLFYLRSAIRHGVNVKGYYIWSLFDNFEWSSGYTVRFGMILVDYKNNLKRYHKLSAIWIKNFLKKTSLYDSSI*	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso12g0448	523	SUPERFAMILY	(Trans)glycosidases	33	514	IPR017853	-
	Gso12g0448	523	Gene3D	Glycosidases	30	515	-	-
	Gso12g0448	523	ProSitePatterns	Glycosyl hydrolases family 1 active site.	418	426	IPR018120	-
	Gso12g0448	523	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	48	62	IPR033132	-
	Gso12g0448	523	Pfam	Glycosyl hydrolase family 1	41	515	IPR001360	GO:0004553\|GO:0005975
	Gso12g0448	523	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	4	519	-	-
	Gso12g0448	523	PANTHER	GLYCOSYL HYDROLASE	4	519	IPR001360	GO:0004553\|GO:0005975
	Gso12g0448	523	PRINTS	Glycosyl hydrolase family 1 signature	342	356	IPR001360	GO:0004553\|GO:0005975
	Gso12g0448	523	PRINTS	Glycosyl hydrolase family 1 signature	418	426	IPR001360	GO:0004553\|GO:0005975
	Gso12g0448	523	PRINTS	Glycosyl hydrolase family 1 signature	441	452	IPR001360	GO:0004553\|GO:0005975
	Gso12g0448	523	PRINTS	Glycosyl hydrolase family 1 signature	462	479	IPR001360	GO:0004553\|GO:0005975
	Gso12g0448	523	PRINTS	Glycosyl hydrolase family 1 signature	486	498	IPR001360	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g0448	Gso-Chr12	3939392	3943163	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g0448	8	508	Glycoside Hydrolase	AT5G42260	55.179	0.0	571

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g0448	-		K01188	gmx:106794108	1083.17