Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0407 ATGATGTCTCCTACATTCTCACTCTCTTGCATGTCAAACTGGTTATGCCCTCTCCATTTTCCAGATTTTGCCAACACTTCCACTTTCAGGCTTCGTTGCTCCCAGGAAAGAAGCCTTGCACCGCCTTCTGTAACTTCTGTTGGGCAAGATGAAAGCATTGGAAGAATAGCAATCAGAAACGACCACGTTTTGAGGAACAACTCTCCGGTGCTTCAACAAAATGGCCTACCTCCTCTAGTTAGTGCATTGAAAGCTTCGGCTGAGCAAAATGTTGCCAGTTTTCACTTTCCTGGACATAACAGAGGGCGTGCTGCGCCCGCTTCGTTGACTCGGCTCATTGGAACAAGACCATTTGTTCATGACTTGCCCGAGCTTCCGGAGCTTGACAACCTCTTTTGCCCACAGGGTCCCATATTAGAAGCACAAACTGAAGCAGCCAAACTGTTTGGATCGTCGCAGACATGGTTTCTTGTTGGAGGTACTACTTGTGGGATACAGGCAGCAATAATGGCAACCTGTTCTCCGGGGGAATTTCTCATTCTTCCAAGGAATTCTCATATATCAGCTATATCTGCTTTGGTATTATCTGGTGCAGTGCCTAAGTACATCGTTCCTGACTATGAGAATGATTGGGACATTGCTGGTGGTGTCACTCCATTACAGGTATTGAAAGCCATACAAGAACTAGAAATGGAAGGGAAAAAAGCAGCAGCAGTCTTCATCACCTCACCTACTTATCATGGTATTTGCAGCAATTTGAGTGAGATTTCTGAGCTGTGTCATTCTCATAAAATTCCTTTGCTTGTTGATGAAGCTCATGGTGCACATTTTGGATTTCATACTGAACTGCCTAACTCAGCCCTCCAGCAAGGAGCTGATCTGACTGTACAGTCTACTCACAAAGTTCTATGCTCTCTGACTCAGTCATCTATGCTGCACATGTCGGGAAATATTGTAGATAAGGAAAAAATTTCTAGATGTCTCCAAACTCTTCAATCCACAAGCCCTAGTTATCTGCTTTTGGCATCCCTGGATGCTGCTAGAGCTCAACTTAGTGAAAGCCCTGATGTTGTATTCAACCAAGCAATGGCATTAGCTTATGAGGCAAAGTGCACGCTAAAACGAATCCCTGGTATATCAGTGCTTGAGAATTCAAGCTTTCCAACCTTTCCTGCAATTGATCCATTGCGTCTCACTGTGGGTTTTTGGAAGGTTGGTTTATCAGGTTACGAAGCAGACGAAATCCTATATGGAGATTACGGGGTCGTCTGTGAACTTGTTGGGAATAAATCTATTACTTATGCATTCAATCTTGGAACTTGTAGGGACCATGTCCAAAGGCTTTTATCAGGAATAAAGCATTTGGCTGCAACATATGTTACCATTCAGCAACCTGAAGAGAGAGTGCTTACAGTTCATGCACCCTTTGATGATAAAATCACGAGTTTGATCCCTAGAGATGCCTTTTTTGCAAGTAAAAGAAAAGTAACGATAGAGGAGAGCATCGGTGAGATTTCAGGGGAGCTTATATGTCCATACCCTCCGGGCATACCAGTATTAATCCCCGGCGAGGTTATTACCAAAAAAGCTGTTGATTATCTTTTTCATGTTAGGAGTAAAGGTGGTGATATTACTGGAGCATCTGATCCCTTACTTTCTTCAATAGTTGTTTGCAATGTATAG 1683 0.4337 MMSPTFSLSCMSNWLCPLHFPDFANTSTFRLRCSQERSLAPPSVTSVGQDESIGRIAIRNDHVLRNNSPVLQQNGLPPLVSALKASAEQNVASFHFPGHNRGRAAPASLTRLIGTRPFVHDLPELPELDNLFCPQGPILEAQTEAAKLFGSSQTWFLVGGTTCGIQAAIMATCSPGEFLILPRNSHISAISALVLSGAVPKYIVPDYENDWDIAGGVTPLQVLKAIQELEMEGKKAAAVFITSPTYHGICSNLSEISELCHSHKIPLLVDEAHGAHFGFHTELPNSALQQGADLTVQSTHKVLCSLTQSSMLHMSGNIVDKEKISRCLQTLQSTSPSYLLLASLDAARAQLSESPDVVFNQAMALAYEAKCTLKRIPGISVLENSSFPTFPAIDPLRLTVGFWKVGLSGYEADEILYGDYGVVCELVGNKSITYAFNLGTCRDHVQRLLSGIKHLAATYVTIQQPEERVLTVHAPFDDKITSLIPRDAFFASKRKVTIEESIGEISGELICPYPPGIPVLIPGEVITKKAVDYLFHVRSKGGDITGASDPLLSSIVVCNV* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0407 560 Pfam Orn/Lys/Arg decarboxylase, major domain 77 379 IPR000310 GO:0003824
Gso12g0407 560 Gene3D - 77 356 IPR015421 GO:0003824
Gso12g0407 560 Gene3D Molybdopterin biosynthesis moea protein, domain 2 496 550 - -
Gso12g0407 560 SUPERFAMILY PLP-dependent transferases 77 456 IPR015424 -
Gso12g0407 560 PANTHER ARGININE DECARBOXYLASE 57 559 - -
Gso12g0407 560 SUPERFAMILY Ornithine decarboxylase C-terminal domain 415 558 IPR036633 GO:0003824
Gso12g0407 560 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 494 538 IPR008286 GO:0003824
Gso12g0407 560 CDD Orn_deC_like 78 375 IPR000310 GO:0003824
Gso12g0407 560 PANTHER ARGININE DECARBOXYLASE 57 559 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0407 - - gmx:100819143 1111.67