Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0384 ATGCTATCTCCGATGGCTCTCTCTGCGCATATTTGCCGTTTCCCCGCCACACGCGCTGACACTTCTTTGCCGGAGAGTCTCACCAGAATCCGGTGCCGGAAACCTCTCTCCGTCCGATGCTCCGGCGATTCCACTTCCGGCTCTGTGGGTTCGGAGTTCGATCCGAAGGTGTTTCGGAAGAACCTTACTCGGAGTAAGAATTATAACCGCAAAGGATTTGGGTACAAGGAAGAGACCCTCCAACTCATGAATCGCGAGTACACCAGTGATATCATTAAGACTTTGAAGGAAAATGGGTATGAGTATACATGGGGTACTGTCACGGTGAAGCTTGCTGAAGCCTATGGATTCTGTTGGGGAGTTGAGAGGGCTGTTCAAATTGCTTATGAGGCCAGAAAACAGTTTCCTACTGAGACAATTTGGCTTACCAATGAAATCATCCACAACCCCACTGTCAATAAGCGGCTAGAGGAGATGAATGTTCAAAATATTCCTCTCGAAGAAGGTGGAAAACAATTTGATGTTGTCAACAAGGGTGATGTAGTCATATTGCCAGCTTTTGGAGCGGCAGTGGAAGAGATGTTGACTTTGAGCGAGAAAAATGTTCAGATCGTTGATACAACTTGCCCATGGGTTGCAAAGGTATGGAATTCTGTTGAAAAACACAAGCAACGAGATTATACCTCTGTAATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCTTCTTTTGCTGGAAAATATATAATTGTGAAGAATATGGCGGAGGCTGAATATGTTTGCGACTATATTCTTGGTGGTGAATTAAATGGATCCAGTTCAACCAAGGAAGCATTTTTAGAGAAATTTAAATTTGCAGTTTCTGAGGGCTTTGATCCAGACAGAGATCTGATTAAAGCTGGCATCGCAAATCAGACAACGATGCTCAAGGGAGAGACAGAAGAGATTGGGAAACTACTGGAGAGGACTATGATGCGCAAATATGGTGTGGAGAACATCAATGAGCACTTCATGAGCTTCAATACAATTTGTGATGCTACTCAGGAGAGACAAGATGCTATGTACAAATTGGTGGAGGAAGATCTGGATCTAATGTTAGTAGTTGGTGGATGGAACTCTAGCAATACATCACACCTGCAAGAGATAGCGGAGGAACGTGGAATTCCTTCTTATTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGGTTGTTGAAGATGCACTCATCAGGGTTTTTGACTTGAAACGGGAAGAGGCGATGCAACTTGCATAG 1389 0.4413 MLSPMALSAHICRFPATRADTSLPESLTRIRCRKPLSVRCSGDSTSGSVGSEFDPKVFRKNLTRSKNYNRKGFGYKEETLQLMNREYTSDIIKTLKENGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWLTNEIIHNPTVNKRLEEMNVQNIPLEEGGKQFDVVNKGDVVILPAFGAAVEEMLTLSEKNVQIVDTTCPWVAKVWNSVEKHKQRDYTSVIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEEIGKLLERTMMRKYGVENINEHFMSFNTICDATQERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEDALIRVFDLKREEAMQLA* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0384 462 Gene3D - 343 461 - -
Gso12g0384 462 Coils Coil 455 462 - -
Gso12g0384 462 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 107 454 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Gso12g0384 462 CDD lytB_ispH 109 450 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Gso12g0384 462 Pfam LytB protein 109 446 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Gso12g0384 462 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 109 446 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Gso12g0384 462 Gene3D - 118 208 - -
Gso12g0384 462 Gene3D - 209 342 - -
Gso12g0384 462 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 6 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0384 Gso-Chr12 3381415 3384766 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0384 K03527 - gmx:100818067 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0384 12 3381415 3384766 Gso11g1034 11 9246435 9249790 GST