Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0372 ATGGTACCTCAAGCTTTGTCAGTGCCTGCGAGTTCCAGCTTGGCTATCGCTTCTCGCACCAGAAGTCCCTCCCACCTCGTATTTTCTCAAAGAAACCCGTGCTCGATAGCTTCTTCCTTGCCAAACCCATATGGCCATTCATCGGAAGTTGGGTTATCAAGTAAAAGCCGTGGCTTTCCTTTAAAACATGATGAGAAAAATATCCATGGTGCTAGTACAAGTTATGGTGCAATTGAAGCCAAGGGGAATCCGCCGATAACTCCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCACATCTGTTTTGTTCAGGAATCGTATAATCTTCATAGGTCAGCCAGTCAATTCACAAGTGGCTCAGAGAGTTATATCCCAGCTTGTGACTCTAGCTACTATAAATGAAAATGCAGACATACTGGTATATATAAATTGTCCTGGTGGAAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACCGTGTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGAGGTGAGAAGGGAATGCGCTATGCGATGCCAAATGCTCGCATAATGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGTTTTTACTGGACAGCCATTAGAGAAGGTGCAACAGTACACAGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA 822 0.4489 MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPCSIASSLPNPYGHSSEVGLSSKSRGFPLKHDEKNIHGASTSYGAIEAKGNPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0372 273 SUPERFAMILY ClpP/crotonase 97 271 IPR029045 -
Gso12g0372 273 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 86 272 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0372 273 ProSitePatterns Endopeptidase Clp histidine active site. 191 204 IPR033135 -
Gso12g0372 273 PRINTS Clp protease catalytic subunit P signature 98 113 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0372 273 PRINTS Clp protease catalytic subunit P signature 138 158 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0372 273 PRINTS Clp protease catalytic subunit P signature 169 186 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0372 273 PRINTS Clp protease catalytic subunit P signature 190 209 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0372 273 PRINTS Clp protease catalytic subunit P signature 247 266 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0372 273 Pfam Clp protease 98 271 IPR023562 -
Gso12g0372 273 Gene3D - 84 273 - -
Gso12g0372 273 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 15 273 IPR023562 -
Gso12g0372 273 CDD S14_ClpP_2 98 268 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0372 273 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 15 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0372 Gso-Chr12 3268473 3272219 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0372 K01358 - gmx:100796744 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0372 12 3268473 3272219 Gso11g1019 11 9096614 9100163 GST