Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0366 ATGGCTACACTTTCCAACCCTTCATTCCTCCTCCACCTTTCCCTGATCATCACTGCAATGTGCTTTGCTGTTTCGCAGCCCTTCATCGGCGTGAACTACGGCCAGGTCGCCGACAACCTTCCGGCGCCGGAGGCCTCGGCGGAGCTCCTCAAGTCCACGACCGTCGGAAAAGTCCGTCTCTACGGCGCCGATCCGGCGATAATCAAGTCCCTGGCGAACTCCGGCATCGGAATCGTGATCGGCGCGGCCAACGGCGACATTCCGAGTCTGGCCTCCGATCCCGACTCGGCGACTCAGTGGGTTAACGCGAACGTGTTGCCCTACTACCCCGAAAGCAACATCACTATGATCGCCGTGGGCAACGAGGTCATGAGCTCCGGCGACGAGAGCCTCGTCTCGCAGCTTCTCCCGGCGATGCAAAATGTCCAGAATGCCCTCAACTCGGCGCCAAAAATAAAGGTTTCTACAGTGCACTCGATGGCCGTGTTGACTCACTCGGATCCTCCATCATCCGGGTCATTCGACCCGGCTCTCGTAAACACCCTCCAACAGTTGCTCGCGTTTCAGAAAGATAACGAATCACCCTTCGCCTTCAACCCGTACCCGTTCTTTTCTTACCAGAGCGACCCGAGACCCGAAACACTCGCTTTTTGTCTTTTTCAACCGAATTCGGGTCGGGTCGATACGGGTAGTGGGAAGGTTTATTCTAACATGTTTGATGCTCAGGTGGATGCAGTGCATGCTGCTTTGAGCAGTATGGGATTCAAGGACATGGAGATTGTGATTGCTGAGACAGGATGGCCCTCTCGTGGGGACAGCAATGAAGTAGGAGCAAGTGTTGAAAATGCCAAGGCCTATAACGGGAACCTCATTGAACACCTTAGATCACTGGTTGGCACTCCTTTGATGCCAGGCAAATCTGTGGACACATTCATTTTTGCGCTCTATGATGAGGATTTGAAACGTGGTCCAGCATCTGAGCGAGCATTTGGTTTGTTCAAAACTGATCTCACCATGGCATATGATGTTGGCCTAGACAAGTCTGGTTCTACCCACAAGAATCCACCAACTAGTCCTGTTACTCCAGCTCCTAAAACGGGAACACAATGGTGCATCCCCAAAGTGGAAGTGACTGAGGCTCAATTGCAGGCAAATATTGATTATATTTGTGGTAGCCAAGTTGTAGATTGTGGGCCAATTCAACCAGAAGGTGCTTGTTATGAACCTAACACGATATCATCTCATGCCGCCTTTGCTATGAATCTCTACTACCAGAAGTTTGGCAGAAATCCATGGAACTGTGATTTCTCTCAAACAGCTATGCTTACATCCCAAAATCCAAGTTACAATGCTTGTGTTTATCCCGGTGGGAGTACCTGA 1380 0.5116 MATLSNPSFLLHLSLIITAMCFAVSQPFIGVNYGQVADNLPAPEASAELLKSTTVGKVRLYGADPAIIKSLANSGIGIVIGAANGDIPSLASDPDSATQWVNANVLPYYPESNITMIAVGNEVMSSGDESLVSQLLPAMQNVQNALNSAPKIKVSTVHSMAVLTHSDPPSSGSFDPALVNTLQQLLAFQKDNESPFAFNPYPFFSYQSDPRPETLAFCLFQPNSGRVDTGSGKVYSNMFDAQVDAVHAALSSMGFKDMEIVIAETGWPSRGDSNEVGASVENAKAYNGNLIEHLRSLVGTPLMPGKSVDTFIFALYDEDLKRGPASERAFGLFKTDLTMAYDVGLDKSGSTHKNPPTSPVTPAPKTGTQWCIPKVEVTEAQLQANIDYICGSQVVDCGPIQPEGACYEPNTISSHAAFAMNLYYQKFGRNPWNCDFSQTAMLTSQNPSYNACVYPGGST* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0366 459 Pfam Glycosyl hydrolases family 17 29 343 IPR000490 GO:0004553|GO:0005975
Gso12g0366 459 Gene3D Glycosidases 28 353 - -
Gso12g0366 459 SMART X8_cls 369 454 IPR012946 -
Gso12g0366 459 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Gso12g0366 459 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 7 12 451 - -
Gso12g0366 459 Gene3D - 366 454 - -
Gso12g0366 459 Pfam X8 domain 369 441 IPR012946 -
Gso12g0366 459 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 12 451 IPR044965 GO:0004553|GO:0005975
Gso12g0366 459 SUPERFAMILY (Trans)glycosidases 29 344 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0366 Gso-Chr12 3213046 3217884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0366 25 455 Miscellaneous Gene Families AT2G16230 63.761 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0366 - - gmx:100810568 715.687