Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0360 ATGGCGGAAGAAGCAATTCTGGGATACCTAGAGAAGAACGATGAGATTAGAGACTCGGGTGAATTCGCAGCTGAATGCGGCATTGACCACAACGAGATCGTGAATGTGATTAAGAGCTTGCACGGTTTCAGATACGTTGATGCGCAAGATATTAAGAGAGAAACATGGGTACTCACTGATGAAGGGAAAACGTATGCTACTGTAGGATCCCCTGAAGTTCAACTTTTTTTGGCCGTTCCTCAAGAGGGTATCTCTAAGGAAGAGCTTCAGAAAAAGCTGGATCCTTCTGTCTTTAAGATAGGTTGTGCTCAGGCTGCGAAGAACAAATGGGTGGATATGGGGAAACAGCTGATGTCTAGAAAGGTCCAACATGTGGATGATAAGGTCAAAGATCTTCTTCTTCAGATACAACAGGGGCTGAACATTGGTTCAGACGAGATCAAAGCACTCAAAGTGAGAAAGCTCATTGTTCCACAGACGTGGAAGGGTTACTCATTGAAAAGAGGTCCTAATTATGCGCCCAAAAGAAAGAAGGTTGTCACTGATCTGACTCGTGATAATTTTCAGAGTGGTGAGTGGAAGGAACTTGAGTTCAAGGAGTACAATTATAGTGCTAAAGGTCAACCTCTTGAGGGTGGCAGTCTTCATCCATTGCTGAAGGTACGTGCTCAGCTGAAACAGATTTTCCTCTGCATGGGATTTGAGGAGATGCCAACAAATAATTTTGTTGAGAGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAACAACACCCAGCCCGTGATTCACATGATACATTCTTTTTGGAAACTCCTTCAACAACAAAGATTTTGCCAGAAGATTATGTTCAGAGAGTGAGGCAAGTTCATGAATCTGGTGGTTATGGGTCTAGAGGGTATGCATATGACTGGAAGAGAGAGGAAGCAAATAAAAACCTTCTGCGAACCCATACAACTGCTGTTTCCTCCAGGATGCTTTACCAATTAGCACAGAAACCATTTGCCCCCAAAAAATATTTCTCTATAGATCGTGTATTCAGAAATGAAGCAGTTGATCGTACACATCTTGCTGAGTTCCACCAAATAGAAGGCCTTGTATGCGATCTAGGACTCACTCTCTGTGACTTAATAGGAGTCCTACATGATTTCTTCTCACGCTTAGGCATGACCAAGCTGAAGTTCAAACCAGCTTACAATCCATACACTGAACCTAGCATGGAGATTTTTAGTTATCATGAAGGCTTTAAAAAATGGGTAGAGGTAGGAAATTCTGGCATGTTCAGACCCGAAATGTTGCAGCCGATGGGACTTCCTGAAGATGTCCAAGTTATTGCATGGGGCCTTTCCCTTGAAAGGCCAACGATGATACTATACGGGATAGATAACATTAGAGATCTCTTTGGACACAAGGTGGATCTTGGGCTTATAAAGAAGAATCCAATATGTCGACTTGGAATTGACTGA 1467 0.4308 MAEEAILGYLEKNDEIRDSGEFAAECGIDHNEIVNVIKSLHGFRYVDAQDIKRETWVLTDEGKTYATVGSPEVQLFLAVPQEGISKEELQKKLDPSVFKIGCAQAAKNKWVDMGKQLMSRKVQHVDDKVKDLLLQIQQGLNIGSDEIKALKVRKLIVPQTWKGYSLKRGPNYAPKRKKVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLEGGSLHPLLKVRAQLKQIFLCMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLETPSTTKILPEDYVQRVRQVHESGGYGSRGYAYDWKREEANKNLLRTHTTAVSSRMLYQLAQKPFAPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDLGLTLCDLIGVLHDFFSRLGMTKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKKNPICRLGID* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0360 488 Pfam PheRS DNA binding domain 1 3 56 IPR040724 -
Gso12g0360 488 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 220 481 IPR006195 -
Gso12g0360 488 Gene3D - 71 125 - -
Gso12g0360 488 Gene3D - 58 156 - -
Gso12g0360 488 Gene3D - 7 199 - -
Gso12g0360 488 Gene3D Bira Bifunctional Protein; Domain 2 216 487 IPR045864 -
Gso12g0360 488 TIGRFAM pheS: phenylalanine--tRNA ligase, alpha subunit 174 479 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Gso12g0360 488 Pfam PheRS DNA binding domain 3 70 125 IPR040725 -
Gso12g0360 488 CDD PheRS_alpha_core 216 473 - -
Gso12g0360 488 SUPERFAMILY Class II aaRS and biotin synthetases 201 473 IPR045864 -
Gso12g0360 488 Pfam tRNA synthetases class II core domain (F) 201 474 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Gso12g0360 488 PANTHER PHENYLALANYL-TRNA SYNTHETASE 3 486 - -
Gso12g0360 488 PANTHER PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT 3 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0360 Gso-Chr12 3170724 3176403 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0360 K01889 - gmx:100777795 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0360 12 3170724 3176403 Gso11g1006 11 8982123 8987456 GST