Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0339 ATGACTCCCAAACTCCAAACCGCGGCCTCCGTGGTGGCCACCGCGATGCTCCTCCGTTCCCTCGCCCGCGACTACGTCCCGGCGGAGCTCCACCACTACCTCCGCTGCAAACTGTCGAAACTCCTCTCCTCATTCTCCTCCGAACTGACTCTGGTCATCGATGAGTTTCACGGGCTGACGCCAAATCCCCTCTTCAGCGCCGCGCAGCTCTACCTCAAACCCCACGCCGCCCCCGATACAAAACGCTTCCGCGCCACCCTGCCCCCGAAATCGCGCCACGTTTCCCTCCTCGTGGAGCGCAACGGAGAAACCACCGACACCTTCAACTCCGTCCAGTTCCGGTGGAAACTGGTCTCCGAACGCGTCCCCGCGAGGTTCATCCATCAGGACTCCTTCCACTCCTTTTCGAAATCCGAGGTTCGGTTCTTCGAGCTGAGATTCCACAAGAAGCATAGGGACATGGTCCTCTCGGAGTACCTCCCGCGCGTGATGGAGGAAGCCGAGGTGGCGCGTGAGCGGAGGAAGACGCTGAAGCTCTTCACGCCGGCGGACATGAGGATGGTGGGAAGGAGAGGGTGCGAGATGTGGCAGGGCGTGAATCTGGACCATCCCGCCAAGTTCGAGACGCTGGCGATGGATTTGGAGATGAAGGAGATGATAATAAAGGATTTGGATACGTTTCTTGAGAGGAAGTTTTTGTATAAGAATGTTGGAAAGGCTTGGAAGAGAGGATACTTGCTATCTGGTCCTCCAGGCACTGGGAAATCGAGCTTGATCGCTGCCATGGCCAATTATCTGAATTTTGATGTCTATGACTTGGAACTTACTGATGTTAGGAGAAACACTGACCTCAGGAAGCTGTTGATTGGCACCGGGAATCGCTCTATTCTTGTTGTTGAGGATATTGATTGTTCCCTTACATTGCAGGATAGGCTTGCGAAACCCAAATCATCGCAACCAGTTGCTATCACACCATGGCCTTTCCACCCACATGACAATCCAAAACCCCAGGTGACGTTATCGGGGTTCCTGAATTTCATAGATGGGTTGTGGTCTAGTTGTGGGGATGAGAGGATCATAGTGTTCACGACCAATCACAAGAACAAATTGGACCCTGCTCTGTTGCGCCCTGGCCGTATGGATGTGCATATCGACATGACTTACTGCACCCCATGTGGGTTCAAAATGCTGGCTTTTAATTACCTTGGGATCACAGAGCACCCACTTTTTGTTGAAGTTGAGACATTGCTGAAGACGACCAATGTGACTCCTGCGGAGGTGGGGGAGCAGTTTTTGAAGAATGAAGACCCGGAAATTGCATTAGAAAGCTTGATGGAGCTCCTTATAGAGAAGGGACGAAACCATGAAAAGAACAAAGCAGCTCTCACCATTGAATGCTTTGAGTCCGCAGAGAGTTTTGAAAATGAAGGATGA 1434 0.523 MTPKLQTAASVVATAMLLRSLARDYVPAELHHYLRCKLSKLLSSFSSELTLVIDEFHGLTPNPLFSAAQLYLKPHAAPDTKRFRATLPPKSRHVSLLVERNGETTDTFNSVQFRWKLVSERVPARFIHQDSFHSFSKSEVRFFELRFHKKHRDMVLSEYLPRVMEEAEVARERRKTLKLFTPADMRMVGRRGCEMWQGVNLDHPAKFETLAMDLEMKEMIIKDLDTFLERKFLYKNVGKAWKRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTDVRRNTDLRKLLIGTGNRSILVVEDIDCSLTLQDRLAKPKSSQPVAITPWPFHPHDNPKPQVTLSGFLNFIDGLWSSCGDERIIVFTTNHKNKLDPALLRPGRMDVHIDMTYCTPCGFKMLAFNYLGITEHPLFVEVETLLKTTNVTPAEVGEQFLKNEDPEIALESLMELLIEKGRNHEKNKAALTIECFESAESFENEG* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0339 477 ProSitePatterns AAA-protein family signature. 358 376 IPR003960 GO:0005524|GO:0016887
Gso12g0339 477 PANTHER BCS1 AAA-TYPE ATPASE 5 458 - -
Gso12g0339 477 Pfam Domain associated at C-terminal with AAA 26 118 IPR025753 -
Gso12g0339 477 Gene3D - 197 384 IPR027417 -
Gso12g0339 477 SMART AAA_5 241 390 IPR003593 -
Gso12g0339 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 429 IPR027417 -
Gso12g0339 477 Pfam ATPase family associated with various cellular activities (AAA) 246 386 IPR003959 GO:0005524|GO:0016887
Gso12g0339 477 CDD AAA 242 388 - -
Gso12g0339 477 Gene3D - 385 452 - -
Gso12g0339 477 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0339 Gso-Chr12 3038618 3040926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0339 221 384 Miscellaneous Gene Families AT5G53170 24.719 9.29e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0339 K08900 - gmx:100789716 942.184