Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0338 ATGGCAACTGATGCTCTTGTGATTTCCAATGGCAATGGCAATGGCAATGCCAAGTCAGAGCTGCATCCGCAGAGGACTTACCAAGTAGTAGTGGTTGCAACCAGAGATATGGGCATTTCTAAGGATGCAAAACTGCCCTGGACATTACCCACTGAACTCAAATTTTTTGAGGAGATCACTACAACAACATCTGATCCGGGGAAGAAGAATGCCGTTGTGATGGGTAGGAAAACATGGGAGAGCATCCCTCCTGAGAACAGGCCACTTCCTGGTCGCCTTAATGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACAGCAGAGAATGTTCTTATATGTGGAAGTATGGCTTCTGCTATGGAGCTGTTGGCTTCTTCTCCTTACTGCCTATCAATTGAGAAAGTATTTCTCACAGGAGGTGGAGAGATATTTAGAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCAATGTATTTCAGACATGGTATTCATCTTTCCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCACCACTTATGCGCGTGTAAGGAGTTCTCCACCAGAGTCCCTGGATCAGAATGCTGATCCATTTTTTTATAATAATTCAGACTCTTTCAAATTTGAGGTCAAGAAATTTTCTTTTCTTCCCAAAATGGTTTATGAGAGACATGAGGAGTTTAAGTATCTTAGGTTGGTTCAAGAAATCATTTCTGAAGGCACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCTCTTCTAACAACAAAGAAAGTATTTTGGCGAGGGGTAGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAGTGCCAAGGCGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGGGAGTACCTTGATAGCATTGGTTTGACAGAAAGGGAGAAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGACCCTTGCAGGAACAGCTCCAGAACCAACCAAAACCTTTTCCAATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCTTTTGTGGCAGCTGATTTCAAGCTCATAGGATATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1593 0.4313 MATDALVISNGNGNGNAKSELHPQRTYQVVVVATRDMGISKDAKLPWTLPTELKFFEEITTTTSDPGKKNAVVMGRKTWESIPPENRPLPGRLNVVLTRSGSFDIATAENVLICGSMASAMELLASSPYCLSIEKVFLTGGGEIFREALNAPGCEAAHITEIEASIECDTFMPRVDTNVFQTWYSSFPLVEDNLRYSFTTYARVRSSPPESLDQNADPFFYNNSDSFKFEVKKFSFLPKMVYERHEEFKYLRLVQEIISEGTTKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKALQEKGIHIWDGNASREYLDSIGLTEREKGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPNDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0338 530 PANTHER THYMIDYLATE SYNTHASE 1 1 530 IPR045097 GO:0016741
Gso12g0338 530 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 26 203 IPR001796 GO:0004146|GO:0046654
Gso12g0338 530 Hamap Thymidylate synthase [thyA]. 247 530 IPR000398 GO:0004799|GO:0006231
Gso12g0338 530 MobiDBLite consensus disorder prediction 1 20 - -
Gso12g0338 530 Pfam Thymidylate synthase 249 530 IPR023451 -
Gso12g0338 530 Pfam Dihydrofolate reductase 29 203 IPR001796 GO:0004146|GO:0046654
Gso12g0338 530 CDD DHFR 31 201 IPR001796 GO:0004146|GO:0046654
Gso12g0338 530 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 530 - -
Gso12g0338 530 Gene3D Dihydrofolate Reductase, subunit A 11 204 IPR024072 -
Gso12g0338 530 ProSitePatterns Thymidylate synthase active site. 392 420 IPR020940 GO:0004799|GO:0006231
Gso12g0338 530 TIGRFAM thym_sym: thymidylate synthase 249 530 IPR000398 GO:0004799|GO:0006231
Gso12g0338 530 PRINTS Thymidylate synthase family signature 288 309 IPR000398 GO:0004799|GO:0006231
Gso12g0338 530 PRINTS Thymidylate synthase family signature 381 400 IPR000398 GO:0004799|GO:0006231
Gso12g0338 530 PRINTS Thymidylate synthase family signature 407 422 IPR000398 GO:0004799|GO:0006231
Gso12g0338 530 PRINTS Thymidylate synthase family signature 425 451 IPR000398 GO:0004799|GO:0006231
Gso12g0338 530 PRINTS Thymidylate synthase family signature 463 480 IPR000398 GO:0004799|GO:0006231
Gso12g0338 530 PIRSF DHFR-TS 11 530 IPR012262 GO:0004146|GO:0004799|GO:0006730
Gso12g0338 530 SUPERFAMILY Dihydrofolate reductase-like 24 203 IPR024072 -
Gso12g0338 530 CDD TS_Pyrimidine_HMase 250 483 IPR023451 -
Gso12g0338 530 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 239 530 IPR036926 -
Gso12g0338 530 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 229 530 IPR036926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0338 Gso-Chr12 3030175 3035141 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0338 K13998 - gmx:100788658 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0338 12 3030175 3035141 Gso11g0988 11 8839925 8844994 GST