Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0337 ATGTCCGGCCCTCTCGACCGTTTCGCAAGACCCTGTTTTGAAGGTTTCTCCGGGAGTGATGAGAAGAAAGAAAGGAGATCTGATTTTGAGAACTCCGAAGATGAAAGAAGAACGAGAATTGGATCTCTGAAGAAGAAAGCGCTTAACGCGTCCTCCAAGTTCAAGCATTCGCTCAAGAAAAAGAGCAGCAGAAGAAAAAGCGATGGCCGTGTTAGCTCTGTTTCGATCGAAGATGTTCGGAACTTCGAGGAGCAGCAGGCCGTTGATGCATTTCGCCAAGCCTTGATCATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGTACTGACACTATTATGGAGGATTTTGAGTTCAAAGAAGTAGATGAAGTTGTGAAGTATTATCCACATGGCCATCATGGTGTTGATAAGGAGGGAAGGCCTGTTTACATTGAGAGACTTGGGAAAGTGGATCCGAACAAACTTATGCAGGTTACGACCATGGATAGATATGTAAAATACCATGTGCAGGAGTTTGAGAAAGCTTTTAAGATAAAGTTTCCTGCTTGCACAATTGCCGCCAAAAGACACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGGGCCTCAAGAACTTTACAAAGTCTGCTCGGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGACTCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATGTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAGTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAGATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATGGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGATATAGCTTCTCCAAAAGTGACGAAGAGCTACTCACACCTGAGGTTGACACCTGTTCGGGAGGAAGCTAAGGTAGTTGGAAAGTTGAGCTCTGCTGGTGGTGGTAACTTAGCTGGGTATGATGAATATGTACCAATGGTGGACAAAGCTGTTGATGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTCGGATTGTGGTAGCTCTAACTGTCTTCTTTATGACGCTGTTTACTCTCTTCCATTCATTCGCATGCCGTGTGACCAAGAAACTTCCTGCCGTATCATCTAATGATGATCAGGGCACTTCAGAGCCTACTCTTGATATAACAAAAATAAACAATGATGACTATCGTCCTCCTTCACCAACTCCAGCATATGCAGAGGCAAATCTCCTTTCCTCAATGATGAAAAGGTTAGGTGAGCTTGAAGTGAAGGTTGACACACTCCAATCTAAGCCATCTGAGATGCCTTATGAGAAAGAAGAATTGCTAAATGCTGCTGTATGTCGGGTGGATGCTTTGGAAGCAGAGTTAATTGCAACTAAAAAGGCTCTTTATGAAGCACTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAGAAGCTAGGTTACGGAAGAAGTTTTGCTGGTGA 1890 0.4397 MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRNFEEQQAVDAFRQALIMEELLPEKHDDYHVMLRFLKARKFDIERAKHMWADMLQWRKEFGTDTIMEDFEFKEVDEVVKYYPHGHHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVQEFEKAFKIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARDLIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLFEIIDASELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGEARRARPVVKVLNSEGKVIAYARPQYPMVKGSDTSTAESGSEAEDIASPKVTKSYSHLRLTPVREEAKVVGKLSSAGGGNLAGYDEYVPMVDKAVDAAWKNQASLQRSQTSKGKPPLPDTPNPPEGIRARIVVALTVFFMTLFTLFHSFACRVTKKLPAVSSNDDQGTSEPTLDITKINNDDYRPPSPTPAYAEANLLSSMMKRLGELEVKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEEARLRKKFCW* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0337 629 MobiDBLite consensus disorder prediction 16 42 - -
Gso12g0337 629 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Gso12g0337 629 Pfam CRAL/TRIO domain 159 320 IPR001251 -
Gso12g0337 629 Gene3D - 72 139 - -
Gso12g0337 629 SUPERFAMILY CRAL/TRIO domain 152 345 IPR036865 -
Gso12g0337 629 MobiDBLite consensus disorder prediction 379 398 - -
Gso12g0337 629 Coils Coil 548 568 - -
Gso12g0337 629 MobiDBLite consensus disorder prediction 510 526 - -
Gso12g0337 629 Gene3D - 140 350 IPR036865 -
Gso12g0337 629 MobiDBLite consensus disorder prediction 451 465 - -
Gso12g0337 629 MobiDBLite consensus disorder prediction 510 536 - -
Gso12g0337 629 MobiDBLite consensus disorder prediction 1 70 - -
Gso12g0337 629 MobiDBLite consensus disorder prediction 49 66 - -
Gso12g0337 629 Pfam CRAL/TRIO, N-terminal domain 103 131 IPR011074 -
Gso12g0337 629 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 624 - -
Gso12g0337 629 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8 3 624 - -
Gso12g0337 629 MobiDBLite consensus disorder prediction 451 474 - -
Gso12g0337 629 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Gso12g0337 629 SMART sec14_4 152 323 IPR001251 -
Gso12g0337 629 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Gso12g0337 629 CDD SEC14 154 321 IPR001251 -
Gso12g0337 629 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Gso12g0337 629 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Gso12g0337 629 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0337 Gso-Chr12 3011861 3017384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0337 85 317 Acyl Lipid Metabolism Gene Families AT5G47730 28.099 5.25e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0337 - - gmx:100784405 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0337 12 3011861 3017384 Gso11g0986 11 8820848 8826200 GST