Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0314 ATGGATGCTATCAGAAAGCAAGCCTCCAAGCTTCGAGAACAGGTCGCTCGCCAGCAGCAGGCTGTTCTGAAGCAGTTTGGGGGTGGCGGTTATGGAGGTTCAGATAATGTGGTTACTGATGGAGTGGAGCTCCAGCTACACCAGAAACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGCATTATCAAAGGGATATTGTTCGTGGTGTAGAAGGTTATATTGTTACTGGATCCAAGCAAGTGGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCAGAAAATACATGTACCAGCGGTAATACACTGTCTAGAGCTGCACTAAGTTTTGCGCGAGCCCATGCTCAAATGGAGAAAGAGCGTGGAAACTTACTAAAAGCTCTTGGTACGCAGGTTGCAGAGCCATTAAGGGCAATGGTGGTGGGAGCTCCATTGGAGGATGCTCGGCATCTTGCTCAACGTTATGACAGAATGCGACAGGAAGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGAGAAATGCCACCCAGTGCAGAGAATACTATGAAATTAGAAGCAGCTGAAGCTAAGCTGCAAGATCTGAAGACAAACATGACCATACTGGGGAAGGAAGCAGCTGCAGCTTTGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACTCTTCAGCGTATTATAGCTATGGTTGAAGCTGAGCGTGCCTATCATCAAATAGTCCTACAAATACTTGATCAGCTTGAGGGAGAAGTGACATCAGAACGACGACAAATTGAAACCCCTCCTACTCCTAGTCTGGATAACACCATGCCACCACCTCCGTCATATGAAGAAGTGAATGGTGTCTATGCTTCTCCGACACACAATGGATCAACAGACAGCATGGGTTACTTCTTGGGAGAGGTTTTATTTCCATATTCTGCTGTATCTGAAGTGGAGCTAAATCTATCAGTTGGCGATTATGTTGTTGTTCGAAAGGTGACAAACAGTGGATGGGCCGAGGGTGAATGCAAAGGCAGGGCAGGTTGGTTTCCGTTTAGTTACATTGAACGGAGGGAGCGGGTTCTTGCGAGCAAGGTGACTGAAGTTTTTTAA 1116 0.4624 MDAIRKQASKLREQVARQQQAVLKQFGGGGYGGSDNVVTDGVELQLHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGNTLSRAALSFARAHAQMEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVREMPPSAENTMKLEAAEAKLQDLKTNMTILGKEAAAALAAVEAQQQRLTLQRIIAMVEAERAYHQIVLQILDQLEGEVTSERRQIETPPTPSLDNTMPPPPSYEEVNGVYASPTHNGSTDSMGYFLGEVLFPYSAVSEVELNLSVGDYVVVRKVTNSGWAEGECKGRAGWFPFSYIERRERVLASKVTEVF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0314 371 Pfam Variant SH3 domain 309 357 IPR001452 GO:0005515
Gso12g0314 371 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 361 IPR001452 GO:0005515
Gso12g0314 371 Coils Coil 149 176 - -
Gso12g0314 371 Gene3D Arfaptin homology (AH) domain/BAR domain 45 267 IPR027267 -
Gso12g0314 371 Coils Coil 1 21 - -
Gso12g0314 371 PANTHER SH3 DOMAIN-CONTAINING 1 371 - -
Gso12g0314 371 SMART SH3_2 305 360 IPR001452 GO:0005515
Gso12g0314 371 SUPERFAMILY BAR/IMD domain-like 45 258 IPR027267 -
Gso12g0314 371 Coils Coil 186 213 - -
Gso12g0314 371 SUPERFAMILY SH3-domain 269 359 IPR036028 GO:0005515
Gso12g0314 371 Gene3D SH3 Domains 301 361 - -
Gso12g0314 371 PANTHER PROTEIN, PUTATIVE-RELATED 1 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0314 Gso-Chr12 2795524 2798951 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0314 - - gmx:100791309 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0314 12 2795524 2798951 Gso11g0958 11 8566962 8570494 GST