Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0312 ATGGCTCTCAACCTCACACCTTCTTCCTACTTTCACCCTTTCATTTCACACCAAATTCACTTTCATACTCTTTCAAAACCTTTCTTTCTCTCACACTCCAAAACCTCAACCTCGTCACTCTCCAAAACCCTATTATGTCTTTGTGCATCACCATCCAACACCTCCCACCCTTCACCAACCCCCATTTTCCTCCCATATCTTCAACAACAAGAACCAGAAAATCGTGAAAAAGAGGGAATAGAAACAATAGTAGAAGAACAACAAGAACAAGAACATGACCCAGATGATCCAATCTACAAATTCTTCAAAACCCGCACTCGGTTTTCTTCCCAAGACCCTGGAAAAGAAGGAAAATTATCCCTTCAGAAGAACCGTCGCATCTCATGGCACCTTGCTTCTGACCTTGTTGAAGAAGAGCCTGAAAAGGGTTTGGTTGAAGAGAAGGAAGAAACAGTGTTTCAGAAGAAGAAGGTTTTGCCTTTGCCTTTGCCTGAGGGCATTGTGGGAGAGATCGTTCAGCTTGCAAGGAACTTGACACAAAATCTAACTCTGGAGGAGGCTTTGGCTGAGTATGAAGGAAGGGTTAGTGAGAAAGATTGTTGGGAGGTTTTGAAATTACTTGGGGAGGAGCAACTTCTGGTGTGTTGTTTGTATTTCTTTCAGTGGATGAGGTCGCAGGAACCTTCACTTGTTACACCTCGGGCTTGCACTGTGTTGTTTCCATTGTTGGGGAAAGCAAGGATGGGTGATAAGTTGATGCTTTTGTTCACAAATTTGCCATCCGGCAGGGAGTTCAGAGATGTTCATGTTTACAATGCCGCAATTTCAGGCCTTCTTTCTAGTGGCAGGTGTGAAGATGCTTGGAAGGTGTATGAGTCAATGGAAGCAGATAATGTTCTTCCAGATCATGTGACATGTTCTATTATGGTTATCGTTATGAGAAAACTTGGCCATAGTGCAAAGGATGCATGGCAATTTTTTGAGAAAATGAATGGAAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCACTAATAAAGTCATTTTGTGTTGAGGGTTTGATGAGTGAAGCTCTCATCATCCTATCTGAACTGGAGAAGAAATGGGTTTCTTCAAATGCAATTGTGTACAACACCCTGATGGATGCATATTGTAAATCCAATCGTGTAGAAGAAGCTGAAGGCCTCTTTATTGAGATGAAAACTAAAGGGATTAAGCACACTGAAGCTACGTTCAACATTCTAATGTATGCATACAGCAGAAAAATGCAACCTGAGATTGTAGAGAAGCTGATGGCTGAAATGCAGGATGCTGGCTTGAAGCCAAATGCCAAATCATATACTTGTCTAATCAGTGCATATGGGAAGCAGAAAAATATGAGTGACATGGCTGCAGATGCATTCTTGAAGATGAAGAAAGACGGTATTAAACCAACTTCACATTCTTATACAGCTCTGATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGCATTAAACCTTCCATAGAAACCTACACTGCTTTACTAGATGCATTTAGACGTGCCGGTGACACCCAAACATTGATGAAAATATGGAAGTTGATGAGGAGGTACAAGGTTGAAGGAACACGTGTCACATTCAACACTCTTGTTGATGGTTTTGCTAAACATGGTCACTACAAGGAAGCAAGAGATGTAATATCTAAGTTTGCAAATGTTGGATTGCACCCAACAGTGATGACATACAATATGCTGATGAATGCATATGCACGAGGAGGGCAACACTCAAAGCTGCCAGAGTTGTTGGAAGAGATGGCAGCTCATAACTTGAAGCCAGATTCTGTAACTTATTCAACTATGATATATGCCTTTCTCCGTGTTCGAGATTTTAGCCAGGCATTTTTTTATCACCAGGAGATGGTCAAGAGTGGGCAGGTGATTGATTTCAATTCTTACCAGAAGCTTCGGGCGATTCTGGATGCTAAAGCTGCAATTAAAAACCGAAAGGATAGGAGATCCTTGATTGGTGTAGTTAGAAATAAGATGGGTGTTGTGAAACCGAAGAGAAAAAAGGATGAGTTATGGAAGTACAGGAAAAGACATGTTAAACAAAAGTAG 2136 0.4148 MALNLTPSSYFHPFISHQIHFHTLSKPFFLSHSKTSTSSLSKTLLCLCASPSNTSHPSPTPIFLPYLQQQEPENREKEGIETIVEEQQEQEHDPDDPIYKFFKTRTRFSSQDPGKEGKLSLQKNRRISWHLASDLVEEEPEKGLVEEKEETVFQKKKVLPLPLPEGIVGEIVQLARNLTQNLTLEEALAEYEGRVSEKDCWEVLKLLGEEQLLVCCLYFFQWMRSQEPSLVTPRACTVLFPLLGKARMGDKLMLLFTNLPSGREFRDVHVYNAAISGLLSSGRCEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKWVSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVEKLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVIDFNSYQKLRAILDAKAAIKNRKDRRSLIGVVRNKMGVVKPKRKKDELWKYRKRHVKQK* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0312 711 PANTHER - 11 710 - -
Gso12g0312 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 478 IPR002885 -
Gso12g0312 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Gso12g0312 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Gso12g0312 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Gso12g0312 711 Gene3D Tetratricopeptide repeat domain 320 436 IPR011990 GO:0005515
Gso12g0312 711 Pfam PPR repeat family 583 630 IPR002885 -
Gso12g0312 711 Pfam PPR repeat family 266 310 IPR002885 -
Gso12g0312 711 Pfam PPR repeat family 373 419 IPR002885 -
Gso12g0312 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Gso12g0312 711 Pfam Pentatricopeptide repeat domain 430 490 IPR002885 -
Gso12g0312 711 Pfam Pentatricopeptide repeat domain 503 557 IPR002885 -
Gso12g0312 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Gso12g0312 711 Pfam PPR repeat 344 368 IPR002885 -
Gso12g0312 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Gso12g0312 711 TIGRFAM PPR: pentatricopeptide repeat domain 446 479 IPR002885 -
Gso12g0312 711 TIGRFAM PPR: pentatricopeptide repeat domain 270 302 IPR002885 -
Gso12g0312 711 TIGRFAM PPR: pentatricopeptide repeat domain 411 444 IPR002885 -
Gso12g0312 711 TIGRFAM PPR: pentatricopeptide repeat domain 587 620 IPR002885 -
Gso12g0312 711 TIGRFAM PPR: pentatricopeptide repeat domain 551 584 IPR002885 -
Gso12g0312 711 TIGRFAM PPR: pentatricopeptide repeat domain 481 514 IPR002885 -
Gso12g0312 711 TIGRFAM PPR: pentatricopeptide repeat domain 375 406 IPR002885 -
Gso12g0312 711 TIGRFAM PPR: pentatricopeptide repeat domain 517 547 IPR002885 -
Gso12g0312 711 TIGRFAM PPR: pentatricopeptide repeat domain 621 654 IPR002885 -
Gso12g0312 711 Gene3D Tetratricopeptide repeat domain 167 319 IPR011990 GO:0005515
Gso12g0312 711 Gene3D Tetratricopeptide repeat domain 437 546 IPR011990 GO:0005515
Gso12g0312 711 Gene3D Tetratricopeptide repeat domain 560 677 IPR011990 GO:0005515
Gso12g0312 711 PANTHER OS03G0856100 PROTEIN 11 710 - -
Gso12g0312 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Gso12g0312 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 653 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0312 Gso-Chr12 2740395 2766781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0312 267 661 Glycosyltransferase AT1G05670 25.505 1.34e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0312 - - gmx:100775643 1377.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0312 12 2740395 2766781 Gso11g0951 11 8524778 8527834 GST