Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0281 ATGGCGGAAGAGTACGAGGAAGGTGGTGAGGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCTATTGTACGATTTCTTCATTTCTCACCCTCTTCAATGGCCTTCTCTCACCGTTCACTGGCTTCCCTCCTCTCCCCAACCTCACTCCCACCCTTCCTTCAATCTCCACAAACTTCTTCTCGCCACTCACACTTCCGAAGGCGAATCAAACTTCCTCATGCTCGCTGACGCATCCCTCCCCGTAGACACCTCACAACACATCGTCGCCACCGATCCGAACAACCCCGTTCTTCCCAAGGTGGAGATTTCTCAAAGGATTTCTGTTGATGGGGAGGTGAATCGAGCGCGGTGCATGCCGCAGAACCCTAGTATTGTTGGTGCCAAGACTTGTAATTCCGAGGTTTATGTGTTTGATTTCACCAAGGAACGTGGGAGTGCGTGTGACCCTGATTTGAGGTTAAGGGGTCATGATAAAGAGGGTTATGGTTTGTCTTGGAGCCCTTTTAAGAACGGGTATCTTTTGAGTGGTTCGCATGACCATAAGGTTTGCTTGTGGGATGTGCCTGGTGCCTCTCAAGAGAAGGTGCTTGATGCACTTCATATTTATGAGGGTCATGAGAATGTGGTTGAAGATGTGTCATGGAATTTGAAGGATGAGAATATGTTTGGGTCCAGTGGAGATGACTGCAAATTGATCATTTGGGACTTGCGGACAAACAAAGCCCAACAATCAGTCAAACCACATGAAAAGGAGGTGAACTTTCTTTCTTTCAATCCATATAATGAATGGATTTTGGCTACAGCATCTTCAGATACAGATGTTGGCCTCTTTGATACACGGAAGCTGGCAGTGCCGCTACATATTTTAAGTAGCCACACAGATGAAGTTTTCCAGGTAGAGTGGGATCCTAATCATGAGACTGTGTTGGCATCTTCTGGTGCTGACAGACGGCTGATGGTTTGGGACCTTAACAGAGTTGGTGGTGAGCAGATAGAGGGAGATGGTGAAGGTGGCCCTCCTGAACTACTATTCTCTCACGGGGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACAGAAATCAGCCATGGGTTATCTCAAGTGTAGCTGAGGACAATTCTTTCCATGTCTGGCAAATGGCTGAGAGCATTTACAATGACGGAGATGATGACAACATGTGGACGGCCGATGATTAA 1206 0.4693 MAEEYEEGGEVEEEFSVWKKNTPLLYDFFISHPLQWPSLTVHWLPSSPQPHSHPSFNLHKLLLATHTSEGESNFLMLADASLPVDTSQHIVATDPNNPVLPKVEISQRISVDGEVNRARCMPQNPSIVGAKTCNSEVYVFDFTKERGSACDPDLRLRGHDKEGYGLSWSPFKNGYLLSGSHDHKVCLWDVPGASQEKVLDALHIYEGHENVVEDVSWNLKDENMFGSSGDDCKLIIWDLRTNKAQQSVKPHEKEVNFLSFNPYNEWILATASSDTDVGLFDTRKLAVPLHILSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLNRVGGEQIEGDGEGGPPELLFSHGGHKGKISDFSWNRNQPWVISSVAEDNSFHVWQMAESIYNDGDDDNMWTADD* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0281 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 243 - -
Gso12g0281 401 SUPERFAMILY WD40 repeat-like 103 383 IPR036322 GO:0005515
Gso12g0281 401 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 13 83 IPR022052 -
Gso12g0281 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 327 - -
Gso12g0281 401 ProSitePatterns Trp-Asp (WD) repeats signature. 312 326 IPR019775 -
Gso12g0281 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 327 IPR001680 GO:0005515
Gso12g0281 401 PANTHER WD40 REPEAT FAMILY 5 398 - -
Gso12g0281 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 156 198 IPR001680 GO:0005515
Gso12g0281 401 SMART WD40_4 149 189 IPR001680 GO:0005515
Gso12g0281 401 SMART WD40_4 342 382 IPR001680 GO:0005515
Gso12g0281 401 SMART WD40_4 241 281 IPR001680 GO:0005515
Gso12g0281 401 SMART WD40_4 198 238 IPR001680 GO:0005515
Gso12g0281 401 SMART WD40_4 285 325 IPR001680 GO:0005515
Gso12g0281 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 247 IPR001680 GO:0005515
Gso12g0281 401 Pfam WD domain, G-beta repeat 156 189 IPR001680 GO:0005515
Gso12g0281 401 Pfam WD domain, G-beta repeat 202 238 IPR001680 GO:0005515
Gso12g0281 401 Pfam WD domain, G-beta repeat 245 281 IPR001680 GO:0005515
Gso12g0281 401 Pfam WD domain, G-beta repeat 346 381 IPR001680 GO:0005515
Gso12g0281 401 Pfam WD domain, G-beta repeat 288 325 IPR001680 GO:0005515
Gso12g0281 401 ProSitePatterns Trp-Asp (WD) repeats signature. 176 190 IPR019775 -
Gso12g0281 401 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 5 398 - -
Gso12g0281 401 PRINTS G protein beta WD-40 repeat signature 176 190 IPR020472 -
Gso12g0281 401 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Gso12g0281 401 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Gso12g0281 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 156 190 - -
Gso12g0281 401 Gene3D - 2 398 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0281 Gso-Chr12 2520664 2523497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0281 202 384 Miscellaneous Gene Families AT5G08390 21.858 1.58e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0281 K10752 - gmx:100791834 803.512