Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0276 ATGTCAATTCTCAAAGTTCTTTTGATTACCATCATTGTTTCATTGGTCATTTCTGCCAGCAGCGCCCATGATGAAGACAACAAGAAGATGACTTCTGAAAGCGATGACAACGACAAAGACAAGAAAAAGACTGTGACTTATGATGGCAGGTCTCTCATTATCAATGGAAGACGAGAGCTTCTCTTCTCCGGTTCCATTCATTACCCACGAAGCACCCCCGAGATGTGGGCAGACATTCTTGAAAAAGCAAAACATGGAGGCATAAAGGTGGTCCAAACTTACATATTCTGGAACATTCATGAGCCTGAGAAAGGCAAGTTCTCAATTGAGCCGCAGTATGATTACATAAAGTTCATGAAGCTCGTTCAAAAGAAAGGAATGTATGTAACCCTCAGGGTTGGGCCTTTCATCCAAGCTGAATGGAACCACGGAGGACTTCCATATTGGCTGAGAGAGATCCCTGATATCATATTCCGCTCTAACAATGAACCCTTTAAGAAGCACATGAAAGAATATGTATCAACTGTTGTAAAAACGTTGAAAGAGGCGAAGCTCTTTGGTCCCCAAGGAGGCCCCATCATCTTGGCACAGATTGAGAATGAGTACAACCATATCCAACGTGCTTTCAGAGAGGAAGGAGATAATTATGTCCAATGGGCTGCGAAAATGGCAGTGTCGCTGGATGTTGGAGTTCCATGGATCATGTGCAAGCAGAGAGATGCTCCTGATCCAGTGATTAATGCTTGCAATGGAAGGCACTGTGGTGATACCTTTGCAGGCCCCAACAAACCTTACAAGCCTTCTCTATGGACTGAAAACTGGACGGTTCAGTATAGAGTGTTTGGAGATCCACCATCCCGAAGATCAGCAGAAGACATTGCCTTTTCAGTTGCTCGCTTCTTCTCTAAGAATGGATCTTTGGTGAACTATTATATGTACCATGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTCACTACAACCCAATATTATGATGAAGCCCCTCTTGATGAGTACGGTATGCAGAGAGAACCAAAATGGAGTCACTTGAGGGATGTGCACAAGGCATTGAGCCTATGCAAGAAGGCCTTGTTCAATGGTGAGTCTACCGTCACAAAACTGAGCCAACATCACGAGACTATAGTTTTCGAGAAGCCAGGAAGTGATTTGTGCGCTGCTTTCCTCACCAACAACCACACCTTGACACCAGCAACCATAAAATTCAGAGGTACTGACTACTATATGCCACCACGTTCCATTAGCATACTCCCTGACTGCAAGACTGTTGTCTTCAACACTCAATTTATTGCTTCACAACATAATTCAAGGAACTTCAAGAGGTCAATGGCAGCAAACAATCATAAGTGGGAGGTGTATTCTGAGAACATTCCTACCACCAAGCAAATTCCAACCAATGAAAAGATTCCTACAGAGCTTTACAGTTTGCTTAAAGACACCAGCGACTATGCATGGTACACCACCAGCGTGGAACTGGGTCCAGAAGACTTGCCAAAGAAGAATGATATATCCCCCGTTCTCCGTATTATGAGTCTTGGCCATTCATTGGTTGCCTTTGTAAATGGAGAATTCATTGGATCAAATCACGGTTCCCATGAAGAGAAAAGTTTTGAATTCCAGAAACCTGTAACCTTGAAGGTTGGAGTTAACCAAATAGCTATCTTGGCTTGCACTGTGGGACTCCCCGACAGTGGAGCATACATGGAGCACAGGTTCGCTGGACCAAAGTCTATTTTCATCCTTGGTCTCAACTCTGGAAAAATTGATCTCGCTTCTAATGGTTGGGGTCATAAGGTTGGTATCAAAGGTGAGGAGCTTGGCATTTTCACTGAAGAGGGGTCAAAGAAAGTACAATGGAAAGAAGCCAAGGGATCTGGACCAGCTCTCTCCTGGTACAAGACAAATTTTGAAACCCCGGAGGGAACGGATCCTGTTGCCATCAGAATGACTGGTATGGGGAAGGGAATGATTTGGATCAATGGCAAAAGCATTGGTCGTCACTGGATGAGTTACCTCTCTCCTCTTGGAATGCCTACTCAGTCAGAGTACCACATCCCCAGAGCTTTCTTCAATCCAAAAGACAACTTGATTGTTGTGTTTGAGGAAGAGATAGCAAATCCAGAAAAGGTTGAGATCCTAACTGTAGACAGAGATACAATATGCAGTTTCATCACAGAGAATCACCCCCCCAATGTGAAGTCATGGGCAGTTAAGAGCGAGAAGTTCCAGGCTCTTTCGAATAATCTGGTGCCAACAGCTACACTCAAATGTCCAAACCGCAGAACCATTAAGGCTGTGGAGTTTGCAAGCTTTGGTGATCCTGCTGGTGTATGTGGAGCCTATACTTTAGGCAAATGTAATGCACCTTCCACCAAGCAGATTGTTGAGAAGCATTGCCTTGGAAAACAATCCTGTAATGTTCCAATTGACAAGGACGCCTTCACTAAGGGCCAAGATGCTTGCCGAAATATGGTGAAGACACTTGCAATCCAAGTGAAGTGTGAAGCCTAG 2532 0.4431 MSILKVLLITIIVSLVISASSAHDEDNKKMTSESDDNDKDKKKTVTYDGRSLIINGRRELLFSGSIHYPRSTPEMWADILEKAKHGGIKVVQTYIFWNIHEPEKGKFSIEPQYDYIKFMKLVQKKGMYVTLRVGPFIQAEWNHGGLPYWLREIPDIIFRSNNEPFKKHMKEYVSTVVKTLKEAKLFGPQGGPIILAQIENEYNHIQRAFREEGDNYVQWAAKMAVSLDVGVPWIMCKQRDAPDPVINACNGRHCGDTFAGPNKPYKPSLWTENWTVQYRVFGDPPSRRSAEDIAFSVARFFSKNGSLVNYYMYHGGTNFGRTSSAFTTTQYYDEAPLDEYGMQREPKWSHLRDVHKALSLCKKALFNGESTVTKLSQHHETIVFEKPGSDLCAAFLTNNHTLTPATIKFRGTDYYMPPRSISILPDCKTVVFNTQFIASQHNSRNFKRSMAANNHKWEVYSENIPTTKQIPTNEKIPTELYSLLKDTSDYAWYTTSVELGPEDLPKKNDISPVLRIMSLGHSLVAFVNGEFIGSNHGSHEEKSFEFQKPVTLKVGVNQIAILACTVGLPDSGAYMEHRFAGPKSIFILGLNSGKIDLASNGWGHKVGIKGEELGIFTEEGSKKVQWKEAKGSGPALSWYKTNFETPEGTDPVAIRMTGMGKGMIWINGKSIGRHWMSYLSPLGMPTQSEYHIPRAFFNPKDNLIVVFEEEIANPEKVEILTVDRDTICSFITENHPPNVKSWAVKSEKFQALSNNLVPTATLKCPNRRTIKAVEFASFGDPAGVCGAYTLGKCNAPSTKQIVEKHCLGKQSCNVPIDKDAFTKGQDACRNMVKTLAIQVKCEA* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0276 843 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 34 838 - -
Gso12g0276 843 PRINTS Glycosyl hydrolase family 35 signature 55 72 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 PRINTS Glycosyl hydrolase family 35 signature 76 94 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 PRINTS Glycosyl hydrolase family 35 signature 131 150 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 PRINTS Glycosyl hydrolase family 35 signature 188 203 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 PRINTS Glycosyl hydrolase family 35 signature 269 284 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 PRINTS Glycosyl hydrolase family 35 signature 306 321 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 PRINTS Glycosyl hydrolase family 35 signature 325 341 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 PRINTS Glycosyl hydrolase family 35 signature 634 648 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 PRINTS Glycosyl hydrolase family 35 signature 661 677 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 SUPERFAMILY Galactose-binding domain-like 421 581 IPR008979 -
Gso12g0276 843 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 190 202 IPR019801 GO:0004553|GO:0005975
Gso12g0276 843 Gene3D - 606 732 - -
Gso12g0276 843 Pfam Beta-sandwich domain in beta galactosidase 365 435 IPR041392 -
Gso12g0276 843 Pfam Glycosyl hydrolases family 35 51 357 IPR031330 -
Gso12g0276 843 SUPERFAMILY (Trans)glycosidases 43 362 IPR017853 -
Gso12g0276 843 Pfam Galactose binding lectin domain 762 841 IPR000922 GO:0030246
Gso12g0276 843 ProSiteProfiles SUEL-type lectin domain profile. 758 842 IPR000922 GO:0030246
Gso12g0276 843 Gene3D - 750 843 IPR043159 -
Gso12g0276 843 SUPERFAMILY Galactose-binding domain-like 600 745 IPR008979 -
Gso12g0276 843 PANTHER BETA-GALACTOSIDASE RELATED 34 838 IPR001944 GO:0004553|GO:0005975
Gso12g0276 843 Gene3D - 411 579 - -
Gso12g0276 843 Gene3D Glycosidases 41 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0276 Gso-Chr12 2481615 2487201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0276 45 841 Glycoside Hydrolase AT2G16730 60.424 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0276 - - gmx:102663614 1680.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0276 12 2481615 2487201 Gso11g0917 11 8248813 8255357 GST