Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0244 ATGGCAAGCCATCCTGGAAATCATGCTCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGATAACATGCTGGCTGAATATTTCGGTACCATCGGATTAATAAAGAAAGATAAACGTACAGGGAGACCAAAAATATGGTTATATCGAGACAAAGAAACTAATGAACCAAAAGGAGATGCTACTGTAACATATGAGGATCCGCATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAGCATATAATGCAGCAGTTGAACCGGGAGTTACTGATAATGTTGGTGGACTAGAGGAAACTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGTCAAAATGATACTTCAGGCAAAGCATGGCAACAAGATGGTGATTGGTTGTGTCTGAATACAAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCACAAGAATCAGGGGGTATTGGCCGGCCAGCTGGTGGAGGACTCTTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAACACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGGATAGATAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATGATGGGGAGAGCAGGAACAGAGAGCGAAGCGAAAAAGAGAGGCCTAGCAGTTGGAATAGGGAGAGGGGAAGAGATCGAGATTGGGATTATGTTGATCGAGATAGAGATTATGGGAGAGATCGGGACCGAAGTAGACACCGTTACTAA 1149 0.4578 MASHPGNHAPSNGSVYVCNLPYGTDDNMLAEYFGTIGLIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVFIAESKNKDDQAYNAAVEPGVTDNVGGLEETTKDVNGGSGRGRGQNDTSGKAWQQDGDWLCLNTSCSNVNFAFRGACNRCGTARPAGASGISGAGGRGKGRAAQESGGIGRPAGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGLPGSGRAGWEVEELGIDRDARESRDRGRERNDGESRNRERSEKERPSSWNRERGRDRDWDYVDRDRDYGRDRDRSRHRY* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0244 382 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 382 - -
Gso12g0244 382 SMART zf_4 151 177 IPR001876 -
Gso12g0244 382 SMART zf_4 215 239 IPR001876 -
Gso12g0244 382 ProSiteProfiles Zinc finger RanBP2 type profile. 213 242 IPR001876 -
Gso12g0244 382 CDD RRM_SARFH 15 97 - -
Gso12g0244 382 Gene3D - 12 95 IPR012677 -
Gso12g0244 382 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Gso12g0244 382 MobiDBLite consensus disorder prediction 314 357 - -
Gso12g0244 382 ProSitePatterns Zinc finger RanBP2-type signature. 217 236 IPR001876 -
Gso12g0244 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Gso12g0244 382 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Gso12g0244 382 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 382 - -
Gso12g0244 382 MobiDBLite consensus disorder prediction 254 277 - -
Gso12g0244 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Gso12g0244 382 MobiDBLite consensus disorder prediction 132 147 - -
Gso12g0244 382 Pfam Zn-finger in Ran binding protein and others 216 242 IPR001876 -
Gso12g0244 382 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Gso12g0244 382 SUPERFAMILY Ran binding protein zinc finger-like 207 243 IPR036443 -
Gso12g0244 382 Coils Coil 257 277 - -
Gso12g0244 382 MobiDBLite consensus disorder prediction 292 357 - -
Gso12g0244 382 Gene3D - 146 182 - -
Gso12g0244 382 Gene3D - 212 243 - -
Gso12g0244 382 SMART rrm1_1 14 95 IPR000504 GO:0003723
Gso12g0244 382 MobiDBLite consensus disorder prediction 244 277 - -
Gso12g0244 382 SUPERFAMILY Ran binding protein zinc finger-like 143 181 IPR036443 -
Gso12g0244 382 MobiDBLite consensus disorder prediction 115 147 - -
Gso12g0244 382 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0244 Gso-Chr12 2160958 2165858 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0244 - - gmx:100780819 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0244 12 2160958 2165858 Gso11g0884 11 7927799 7932276 GST