LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g0241	ATGGCTTCTGCGCCATCGAGAACCCTAACGGACTTTTTCCAACCCGCTTCGAAGCGCTTGAAGCCCACTCTGCCCGCATCATGCAAATCCGACGACGCCAATGCTTCCACGCTCTCCGTCGATCAGAAGTTGCGCATGGAATACAACAAGCTCCTCGCCAAGTCCAAGAGGAATCTCAAACTCTGCGTCGAGAGGGTCTCCAAAAGCAAAGGTTTAGGTGGCGTGAAGCTGGAAGAGCTGCTGGTGGAAGAAACGTGGTTGGAAGCTCTACCTGGTGAACTCCAAAAACCCTATGCCCTCACTCTCTCCAAATTCGTTGAAAGTGAGATTTCGGGCGGAGACGGCGTCATTTTCCCTCCGACGCACTTGATTTTCAACGCTCTTAACTCCACGCCTTTTCATACAGTGAAAGCTGTTATCCTTGGCCAGGACCCTTATCATGGTCCTGGTCAAGCAATGGGGCTTTCATTCTCGGTTCCCGAGGGAATCAAAGTCCCTTCCAGTTTGGTAAATATATTTAAGGAACTTCACCAAGACCTTGGCTGCTCCATTCCAACTCATGGAAATCTTCAAAAATGGGCTGTGCAGGGTGTTCTCTTGCTGAATGCTGTTCTCACAGTCAGGAAGCATCAAGCAAATTCTCATGCCAAAAAAGGCTGGGAACAATTTACTGATGTTGTTATCAAGACCATCTCACAGAAGAAGGAAGGAGTTGTGTTTCTGTTGTGGGGAAACTCTGCTCGGGAAAAATCTAGGTTAATTGATGCAAGAAAGCATCATGTTCTTACTGCTGCACATCCTTCTGGTTTGTCTGCAAATAGAGGCTTCTTTGGCTGCAGGCACTTCTCTCGCACTAACCAACTTCTGGAGCAAATGGGGATTGATCCAATAGATTGGCAACTATAA	906	0.4779	MASAPSRTLTDFFQPASKRLKPTLPASCKSDDANASTLSVDQKLRMEYNKLLAKSKRNLKLCVERVSKSKGLGGVKLEELLVEETWLEALPGELQKPYALTLSKFVESEISGGDGVIFPPTHLIFNALNSTPFHTVKAVILGQDPYHGPGQAMGLSFSVPEGIKVPSSLVNIFKELHQDLGCSIPTHGNLQKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQFTDVVIKTISQKKEGVVFLLWGNSAREKSRLIDARKHHVLTAAHPSGLSANRGFFGCRHFSRTNQLLEQMGIDPIDWQL*	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso12g0241	301	TIGRFAM	ung: uracil-DNA glycosylase	84	293	IPR002043	GO:0004844\|GO:0006281\|GO:0006284
	Gso12g0241	301	Hamap	Uracil-DNA glycosylase [ung].	83	300	IPR002043	GO:0004844\|GO:0006281\|GO:0006284
	Gso12g0241	301	SMART	UDG_2	129	289	IPR005122	-
	Gso12g0241	301	SMART	UDG_2_a	129	289	-	-
	Gso12g0241	301	PANTHER	URACIL-DNA GLYCOSYLASE	8	301	IPR002043	GO:0004844\|GO:0006281\|GO:0006284
	Gso12g0241	301	Pfam	Uracil DNA glycosylase superfamily	134	288	IPR005122	-
	Gso12g0241	301	ProSitePatterns	Uracil-DNA glycosylase signature.	137	146	IPR018085	GO:0006281\|GO:0016799
	Gso12g0241	301	SUPERFAMILY	Uracil-DNA glycosylase-like	81	301	IPR036895	-
	Gso12g0241	301	CDD	UDG-F1-like	98	299	IPR002043	GO:0004844\|GO:0006281\|GO:0006284
	Gso12g0241	301	Gene3D	-	65	301	IPR036895	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g0241	Gso-Chr12	2137248	2141518	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g0241	K03648		-	gmx:100818241	571.237

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso12g0241	12	2137248	2141518	Gso11g0881	11	7906479	7910006	GST