Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0234 ATGTACTTGAGGAGAATACAATGCAGAGATCGGACATGGGCTTTGGTGTTGCAGCCATCGAAATACTTCTTTAGGCCAAGATTCTCTGATCAACGATATTTTCAATCTTTGTCCCCTAAGACCACTGTGGAAGAATATGCTTCACATGGAAGGATCATCAGAAAACATCTTTTAGGCTTAGATTTATGTAGGCATACTTCATCTAGAAATAGTTTCACTGTTCCGGACCGAAGGCCTAGTTTATGTCTTAACAGTACTCAGTTACGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACATGTAAATGTTAATGATGGAGCTAACTTTGATAAAGGACAGAAACAACAAGAGAAGTTTGGGAAAGATGTCAAGTACAGCAATGCACATGCACGACTTGGAGAACAGGAACAAGAGGAATGGCTTAATAATGAGAAGCTTTCTATAGAAAGTAAAAGGAGAGAATCACCATTTTTGACAACAAGGGATAAGTTTAAAAAAGAGTTTATGAGAAGAATTATTCCTTGGGAGAAGATAAACATTTCCTGGGACACATTTCCTTATCACATTCATGAGAATACCAAAAATCTTCTGGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGCTTGCTTCATCTTTTGGCAGTCGCCTCACATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGAACTGAGCTGTATCGTGAGAGATTGGTTAGGGCTCTTGCACAAGATTTACAAGTTCCTCTGTTAGTGCTTGATAACAGCATTCTTGCTCCTTATGATATTGATGATGATTTATCATCAGATTACGAGTCTGACGAGGATAATGCAGAGTCTGGGGAGGAGGGTTCTTTGGAATCAGAGAATGAGGATGATAATGATGCTACAAATGAAGAAGAGTGGGCTAGCAGTACCGAGACCAAGTCAGATGCAAGTGATAATGAAGATGCAATAGCGGCTGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCTGTTATTCGGAAACTTGTTCCTTACAATGTTGGAGAATTTGAAAAGATAGTGTCTGGTGAATCTGAGAATTCTGAGTCATCTAAGTCTAATGATGCCAAATCTTCTGATCAATCTGGATGCCAGCTAAGAAAAGGTGACCGTGTGAAGTACATTGGGCCATCTGTTAAAGTTAGAGACGAGGATAGGATCATACTGGGGAAGATACCGATATCTGATGGTACAACTAATGCTTATACTATTATACATGGCAGGTGGGTTGGAGAAGGAAGGAGGCTAAGGTATTGTGAGTTGTGCTCTCTACGAGGGCCTTTAACTAAAGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCGAGTTGCTGTCATCTTGGATATTAATGAAGATAGGGTCAATGAGGGCGAGGTGGAGAACCTTAATGAGGATCATACAAAACCCCCAATTTATTGGATACATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACATGATTGCTACATAGCAGTGGAGGCTTTATGTGAGGTTTTGCATCGCAAACAACCTCTTATTGTCTATTTTCCGGACAGTTCACAATGGTTACATAAAGCTGTTCCTAAGTCAAACCGAAATGAGTTTTTTCATAAGGTTGAAGAGATGTTTGACCGGTTATCTGGCCCTATAGTGTTCATTTGTGGGCAAAACAAAATTCAGTCAGGATCAAAGGAGAAAGAAGAATTCACAATGATACTTCCGAACTTTGGACGTGTTGCTAAGCTGCCTCTTTCTCTGAAGCATTTAACTGAGGGAATTAAAGGGGACAAGACATCAGAAGATGATGAAATTAACAAGCTCTTCTCCAATGTTTTGAGTATACTTCCACCTAAGGATGAGAATCTGCTGGCAACATTCAAGAAACAACTTGAGGAAGATAAGAAAATTGTGACTTCACGTAGTAATTTGAATGCATTACGGAAGGTTCTCGAAGAACATCAGCTATCCTGCATGGACCTTTTGCTTGTAAATACTGATAGCATCATTTTGACAAAGCATAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAAATCATTACTTGTCATCATGCTTGCTTCCTTCTATTAAAGGAGAAAGATTGTACCTACCTCGTGAAAGTCTGGAAATTGCAGTCTCAAGATTGAAGGGCCAGGAAACTATGTCACGGAAGCCTTCTCAAAGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCAGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAATTTGATGACATAGGTGCTCTTGAAGATGTGAAAAAGGCACTTAATGAACTCGTTATTCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGTGGAAATCTGTTGCGGCCCTGTAAAGGAATTTTACTTTTTGGTCCTCCTGGCACTGGGAAAACCCTTCTGGCCAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTCGGAGATGCTGAAAAACTAACCAAAGCTCTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTGTATTTGTCGATGAGGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAACGAGTTTATGGCAGCTTGGGATGGATTGAGGTCAAAAGAAAACCAAAGAATCCTTATTCTAGGTGCAACAAACCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCGGATGCTGAAAACCGAATGAAGATTTTAAGAATCTTTCTTGCACAAGAAAATTTGAATTTTGATTTTCAGTTTGACAAACTTGCAAACTTCACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCGGCATATAGACCTGTTCAAGAACTCTTAGAGGAAGAAAAGAAGAGAGCCAGTAATGATACAACTTCGGTACTAAGGCCTCTTAATTTGGATGATTTTATTCAGGCAAAATCCAAGGTGGGTCCATCAGTTGCGTATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAACGAAATGTACGGAGAAGGAGGTAGTAGAACAAAAGCGCCATTTGGATTTGGGACCTGA 3174 0.4058 MYLRRIQCRDRTWALVLQPSKYFFRPRFSDQRYFQSLSPKTTVEEYASHGRIIRKHLLGLDLCRHTSSRNSFTVPDRRPSLCLNSTQLRAYSSESDGRNASEDKHVNVNDGANFDKGQKQQEKFGKDVKYSNAHARLGEQEQEEWLNNEKLSIESKRRESPFLTTRDKFKKEFMRRIIPWEKINISWDTFPYHIHENTKNLLVECAASHLRHNKLASSFGSRLTSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDNSILAPYDIDDDLSSDYESDEDNAESGEEGSLESENEDDNDATNEEEWASSTETKSDASDNEDAIAAAEAHLKKVKAAVIRKLVPYNVGEFEKIVSGESENSESSKSNDAKSSDQSGCQLRKGDRVKYIGPSVKVRDEDRIILGKIPISDGTTNAYTIIHGRWVGEGRRLRYCELCSLRGPLTKGQRGEVYEVNGDRVAVILDINEDRVNEGEVENLNEDHTKPPIYWIHVKDIENDLDAQSHDCYIAVEALCEVLHRKQPLIVYFPDSSQWLHKAVPKSNRNEFFHKVEEMFDRLSGPIVFICGQNKIQSGSKEKEEFTMILPNFGRVAKLPLSLKHLTEGIKGDKTSEDDEINKLFSNVLSILPPKDENLLATFKKQLEEDKKIVTSRSNLNALRKVLEEHQLSCMDLLLVNTDSIILTKHKAEKVVGWAKNHYLSSCLLPSIKGERLYLPRESLEIAVSRLKGQETMSRKPSQSLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIVFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLNFDFQFDKLANFTDGYSGSDLKNLCIAAAYRPVQELLEEEKKRASNDTTSVLRPLNLDDFIQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKAPFGFGT* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0234 1057 MobiDBLite consensus disorder prediction 96 124 - -
Gso12g0234 1057 SMART AAA_5 800 937 IPR003593 -
Gso12g0234 1057 MobiDBLite consensus disorder prediction 272 307 - -
Gso12g0234 1057 Gene3D - 763 1039 IPR027417 -
Gso12g0234 1057 MobiDBLite consensus disorder prediction 357 382 - -
Gso12g0234 1057 Pfam ATPase family associated with various cellular activities (AAA) 804 934 IPR003959 GO:0005524|GO:0016887
Gso12g0234 1057 Gene3D - 936 1021 - -
Gso12g0234 1057 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 1055 - -
Gso12g0234 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 762 992 IPR027417 -
Gso12g0234 1057 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1055 - -
Gso12g0234 1057 MobiDBLite consensus disorder prediction 92 124 - -
Gso12g0234 1057 ProSitePatterns AAA-protein family signature. 907 926 IPR003960 GO:0005524|GO:0016887
Gso12g0234 1057 MobiDBLite consensus disorder prediction 271 321 - -
Gso12g0234 1057 Pfam AAA+ lid domain 957 993 IPR041569 -
Gso12g0234 1057 CDD AAA 802 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0234 Gso-Chr12 1984219 2000063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0234 763 995 Calmodulin-binding Proteins AT3G56690 38.136 2.13e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0234 - - gmx:100802939 2028.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0234 12 1984219 2000063 Gso11g0863 11 7708215 7726781 GST