Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0220 ATGGAGATAAGTTTGGGGAAACTTGCATTTGACATTGATTTTCATCCCTCAGATAATCTTGTTGCCGCCGGTCTAATTACCGGCCACCTTCACCTATACCGTTATAGCCCTCATACTGTCCCTGTGAGGCTGTTGGAAGTTCATGCTCACACTGAGTCTTGCAGGGCTGCTCGATTCATCAACGGTGGACGTGCACTCTTAACGGGTTCTCCGGATTGCTCAATACTGGCTATAGATGTGGAAACTGGTTCTACAATTGCCCGGGTTGATAATGCTCACGAATCTGCGGTCAATAGATTGATAAACCTGACTGAGTCAACTGTTGCCTCAGGAGATGATGATGGTTGTATAAAGGTATGGGATACCAGAGAACGCTCTTGTTGCAATTCTTTTAATGTCCATGAAGATTACATTTCAGACATTACTTTTGCATCTGATGCAATGAAACTGTTGGCAACAAGTGGAGATGGGACTCTGTCTGTTTGCAATCTTCGAAGAAATACAGTGCAAGCTCGATCAGAATTTTCGGAAGATGAGTTGCTGTCTGTTGTTTTAATGAAGAATGGTAGGAAAGTTGTATGCGGATCACAAACTGGAATCATTCTATTGTATGCATGGGGATGCTTCAAGGATTGTAGTGATCGATTTACTGATCTTTCTTCGAACTCTATTGATGCAATGTTGAAGCTTGATGAAGATAGGATTATTACTGGATCAGAGAATGGGATTATCAACCTGGTTGGGATATTACCTAACAGAGTCATCCAGCCAATAGCAGAACACTCAGAGTATCCTGTTGAGTGTCTTGCATTTTCTCATGATAGGAAGTTCCTTGGAAGCATTGCTCATGATCAAATGTTGAAGCTATGGGACTTGGATAATATACTGCCAGGTTCAAGAAACACACAAACAAATGAAAGTGGAGTGATTGATAGTGACGATGATGAGATGGATGTTGATGGGAACAAGAGAAAGAATGGGCATGCTGTAGGTGGTTCGAACAACTTCTTTGCAGATTTATAG 1023 0.4184 MEISLGKLAFDIDFHPSDNLVAAGLITGHLHLYRYSPHTVPVRLLEVHAHTESCRAARFINGGRALLTGSPDCSILAIDVETGSTIARVDNAHESAVNRLINLTESTVASGDDDGCIKVWDTRERSCCNSFNVHEDYISDITFASDAMKLLATSGDGTLSVCNLRRNTVQARSEFSEDELLSVVLMKNGRKVVCGSQTGIILLYAWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAEHSEYPVECLAFSHDRKFLGSIAHDQMLKLWDLDNILPGSRNTQTNESGVIDSDDDEMDVDGNKRKNGHAVGGSNNFFADL* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0220 340 PIRSF WD_rpt_55 1 340 IPR017422 -
Gso12g0220 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 90 130 IPR001680 GO:0005515
Gso12g0220 340 MobiDBLite consensus disorder prediction 301 327 - -
Gso12g0220 340 SUPERFAMILY WD40 repeat-like 10 294 IPR036322 GO:0005515
Gso12g0220 340 SMART WD40_4 38 79 IPR001680 GO:0005515
Gso12g0220 340 SMART WD40_4 124 163 IPR001680 GO:0005515
Gso12g0220 340 SMART WD40_4 82 121 IPR001680 GO:0005515
Gso12g0220 340 SMART WD40_4 168 205 IPR001680 GO:0005515
Gso12g0220 340 SMART WD40_4 251 291 IPR001680 GO:0005515
Gso12g0220 340 SMART WD40_4 1 34 IPR001680 GO:0005515
Gso12g0220 340 Gene3D - 8 223 IPR015943 GO:0005515
Gso12g0220 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 294 IPR001680 GO:0005515
Gso12g0220 340 Pfam WD domain, G-beta repeat 92 121 IPR001680 GO:0005515
Gso12g0220 340 Pfam WD domain, G-beta repeat 260 291 IPR001680 GO:0005515
Gso12g0220 340 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Gso12g0220 340 ProSitePatterns Trp-Asp (WD) repeats signature. 108 122 IPR019775 -
Gso12g0220 340 PANTHER WD REPEAT-CONTAINING PROTEIN 55 9 314 - -
Gso12g0220 340 PANTHER WD REPEAT-CONTAINING PROTEIN 55 9 314 - -
Gso12g0220 340 Gene3D - 224 337 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0220 Gso-Chr12 1869515 1876014 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0220 K24750 - gmx:100777451 676.396