Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0189 ATGGCTGCCACTAATAACATTCATGGGAACACTGAATCTGCTCAATCCAACATTGCTCCTCCCACTAAGCAGCCTCTACATCCTTCTAAGACTGTTGATTCTCAATCTGTACTCAAAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCGTTTCCTGAGGAGGACAACATATTCTTCTGGAAGGGAACAATAACAGGAAGCAAAGATACTGTGTTTGAAGGCACAGAGTATAAGCTATCACTCTCCTTCCCCAATGACTACCCTTTCAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATTTTGATGTGCATGGCAACATATGCTTGGACATACTCCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTTCTATCTATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCACTAAACCAACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTGGAGAAGTTGTACAAATCTGCAAATTGA 543 0.4217 MAATNNIHGNTESAQSNIAPPTKQPLHPSKTVDSQSVLKRLQSELMALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNFDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNQQAAQLWSNQEEYRKMVEKLYKSAN* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0189 180 PANTHER BNAC06G03670D PROTEIN 10 178 - -
Gso12g0189 180 SMART ubc_7 39 180 - -
Gso12g0189 180 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 178 - -
Gso12g0189 180 Pfam Ubiquitin-conjugating enzyme 40 174 IPR000608 -
Gso12g0189 180 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 36 180 IPR000608 -
Gso12g0189 180 SUPERFAMILY UBC-like 32 176 IPR016135 -
Gso12g0189 180 CDD UBCc 39 176 IPR000608 -
Gso12g0189 180 Gene3D Ubiquitin Conjugating Enzyme 29 180 IPR016135 -
Gso12g0189 180 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0189 Gso-Chr12 1577855 1579708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0189 38 145 Miscellaneous Gene Families AT3G17000 33.628 3.72e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0189 K06688 - gmx:100305664 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0189 12 1577855 1579708 Gso11g0813 11 7299312 7301022 GST