Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0178 ATGTTTTTGGCGAGACCCATTTTCCGAGGACCCTCCCTTTGGGCGTTGCACTCTTCCTATGCATATTCCTCTGCCTCTGCAGCTGCTATTCAAGCTGAGAGAACCATCAAAGAAAGGCCCAGAAACGATTGGAGCCGAGACCAAGTCAAATCCATCTACGACTCTCCCATTCTCGATCTTCTCTTCCACGGGGCTCAAGTTCACAGACATGCTCATAACTTCAGGGAAGTTCAGCAGTGTACTCTTCTGTCTATCAAAACAGGAGGGTGCAGTGAAGATTGTTCCTATTGTCCTCAATCCTCTAAGTATGATACAGGAGTCAAAGGCCAACGCCTTATGAACAAGGAAGCTGTTCTCCAGGCTGCAAAGAAGGCAAAAGAGGCTGGGAGCACTCGCTTTTGTATGGGTGCTGCGTGGAGGGATACACTAGGAAGAAAGACCAACTTCAACCAGATCCTTGAATATGTGAAAGACATAAGGGACATGGGAATGGAGGTTTGTTGCACCCTTGGCATGCTGGAGAAACAGCAGGCTGTTGAACTCAAGAAGGCAGGTCTCACTGCTTATAATCACAATCTTGACACTTCAAGGGAGTATTATCCAAACATAATCACAACAAGGACTTATGATGAGCGTCTTCAAACCCTTGAGTTTGTTCGGGATGCAGGGATCAATGTTTGTTCTGGAGGAATTATAGGGCTTGGAGAAGCAGAGGAGGATCGTGTAGGTTTGTTACATACATTGTCAACACTCCCCACCCATCCAGAGAGTGTTCCTATTAATGCACTTGTTGCTGTAAAGGGAACCCCTCTTGAGGATCAGAAGCCTGTTGAAATATGGGAGATGATTCGCATGATAGCGACTGCACGTATCATAATGCCAAAAGCAATGGTAAGATTATCAGCTGGCAGAGTTCGATTCTCCATGCCTGAGCAGGCATTGTGCTTTCTGGCCGGTGCAAATTCTATATTCACTGGTGAAAAGCTTCTCACTACTCCTAATAATGATTTTGATGCTGATCAACTCATGTTTAAAGTTCTTGGACTCCTCCCAAAAGCTCCAAGCTTAAATGAAGGTGAAACTAATGTGACAGAAGATTATAAGGAAGCAGCTTTTTCTAGTTGA 1125 0.4507 MFLARPIFRGPSLWALHSSYAYSSASAAAIQAERTIKERPRNDWSRDQVKSIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGVKGQRLMNKEAVLQAAKKAKEAGSTRFCMGAAWRDTLGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLQTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLSTLPTHPESVPINALVAVKGTPLEDQKPVEIWEMIRMIATARIIMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLLPKAPSLNEGETNVTEDYKEAAFSS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0178 374 Pfam Radical SAM superfamily 87 245 IPR007197 GO:0003824|GO:0051536
Gso12g0178 374 PANTHER BIOTIN SYNTHASE 19 367 IPR002684 GO:0004076|GO:0009102
Gso12g0178 374 SUPERFAMILY Radical SAM enzymes 42 351 - -
Gso12g0178 374 ProSiteProfiles Radical SAM core domain profile. 75 304 IPR007197 GO:0003824|GO:0051536
Gso12g0178 374 SFLD biotin synthase 36 355 IPR024177 -
Gso12g0178 374 SMART MiaB 80 288 IPR006638 GO:0003824|GO:0051536
Gso12g0178 374 PIRSF Biotin_synth 24 358 IPR024177 -
Gso12g0178 374 SMART BATS_2 259 351 IPR010722 -
Gso12g0178 374 Hamap Biotin synthase [bioB]. 42 352 IPR002684 GO:0004076|GO:0009102
Gso12g0178 374 TIGRFAM bioB: biotin synthase 52 349 IPR002684 GO:0004076|GO:0009102
Gso12g0178 374 Gene3D Aldolase class I 41 353 IPR013785 -
Gso12g0178 374 CDD Radical_SAM 87 287 - -
Gso12g0178 374 Pfam Biotin and Thiamin Synthesis associated domain 259 349 IPR010722 -
Gso12g0178 374 SFLD BATS domain containing 36 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0178 Gso-Chr12 1469937 1474224 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0178 K01012 - gmx:732577 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0178 12 1469937 1474224 Gso11g0800 11 7183535 7187687 GST