Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0170 ATGGGATGCAAGCGAACACCGTTGAAAAGAAAGTTGAAGAATATGAGCAGCAGCGCAGGGAAGTTGGTGTGTGTCACCGGTGCTGCCGGTTATATTGCTTCATGGATTGTCAAGTTCCTACTTGAACGTGGTTACACTGTCAGGGCCACTGTTCGAAACCCAAATGATCACACGAAGGTAGAACATTTGCTAAAACTTGAAGGTGCAAAGGAGAGACTGCACCTTTTTAAGGCAGATCTTTTGGGTGAAAATTCTTTTGACTCCATTGTTGAGGGCTGTGATGGCGTCTTTCATACTGCTTCTCCTTTTATTATCAACGTCAAAGACCCACAGGCTGACCTACTTGACCCAGCAGTGAAGGGAACTCTTAATGTTCTTAAATCATGTGTAAAATCGCCATCTGTGAAACGAGTCATCTTAACATCTTCTGTGGCTGCAGTTGCATATAATAAAAGGCCTAAAAGTCCTGAAGTTGTAGTTGATGAAACCTGGTGGTCTGATCCAGATTACTGTAGGGAATTAAAGCTGTGGTATTTACTTTCAAAGACTTTGGCTGAAGATGCTGCCTGGAAATTTGCCAAAGAAAACGACCTTGACTTGGTTGTTGTTAACCCAGCAATGGTTGTAGGGCCTCTTTTGCAAGCAGAGCTTAACACTAGTGCTGCTATTATTTTAAACCTAATAAATGGTTCAGAAACTTTTTCAAATGATACATATGGATGGATCAATGTGAAAGATGTTGCAAACGCCCATATTCAGGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTTTAGTTGAGAGAGTGGCACACTACTCTGAACTCGCCAGGATTTTACGTGATCAGTACCCGACATATCAAATTCCAGAAAAGTCTGCAGACGATAAGCCTTATGTACCAACATTTCAGGTTTCCAAAGAAAAGGCAAAGACCTTGGGGATTGAATTTATTCCTTTGGAAGTGAGTCTTAGAGAGACAGTGGAAACTTTGAAAGAAAAGAACTTTGCCAACTTTTAG 1020 0.4127 MGCKRTPLKRKLKNMSSSAGKLVCVTGAAGYIASWIVKFLLERGYTVRATVRNPNDHTKVEHLLKLEGAKERLHLFKADLLGENSFDSIVEGCDGVFHTASPFIINVKDPQADLLDPAVKGTLNVLKSCVKSPSVKRVILTSSVAAVAYNKRPKSPEVVVDETWWSDPDYCRELKLWYLLSKTLAEDAAWKFAKENDLDLVVVNPAMVVGPLLQAELNTSAAIILNLINGSETFSNDTYGWINVKDVANAHIQAYEIASASGRYCLVERVAHYSELARILRDQYPTYQIPEKSADDKPYVPTFQVSKEKAKTLGIEFIPLEVSLRETVETLKEKNFANF* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0170 339 CDD FR_SDR_e 23 314 - -
Gso12g0170 339 Gene3D - 21 339 - -
Gso12g0170 339 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 16 335 - -
Gso12g0170 339 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 16 335 - -
Gso12g0170 339 Pfam NAD dependent epimerase/dehydratase family 23 256 IPR001509 -
Gso12g0170 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 332 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0170 Gso-Chr12 1392985 1396932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0170 16 339 Miscellaneous Gene Families AT5G19440 68.519 6.57e-176 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0170 - - gmx:100809326 648.277