Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0166 ATGACGACGTCGTTCGGAGGACCAGCCACCACCTCAGCGCCGCTCAAGGACACCAAGCTTCAGATCCCAAGCTTCCATTGCTTCAGCTCTGCTTCCGCCTCTGCTCTCTCGCGCAATGCCCTCTCCCTTCCTTCTTCCACGCGCTCTTTCTCCCTCATACGTGCTGTTTCCACGCCTGCGCAGTCCGAAACTGCCACTGTCAAGCGCAGCAAAGTCGAAATATTCAAAGAACAAAGCAATTTCATAAGATATCCTCTTAATGAGGACATGCTGACGGATGCCCCTAATATAGGTGAAGCCGCCACTCAGTTGATCAAGTTTCATGGTAGCTATCAACAGTACAATAGAGAGGAGCGTGGTTCCAGAAGCTACTCTTTCATGATTCGCACTAAGAACCCCTGCGGGAAGGTTTCCAACCAACTTTACCTCACCATGGATGATCTTGCTGATCAGTTTGGGATTGGGACGCTTCGCTTGACCACCAGGCAGACGTTTCAGCTCCATGGTGTTCTCAAGAAGGACCTTAAAACGGTGATGGCTACCATTATTAGAAACATGGGCTCCACTCTTGGTGCGTGCGGCGACCTAAACAGGAATGTGCTTGCTCCTGCTGCTCCCCTTGTGAGAAAAGATTACCTCTTTGCTCAACAAACTGCCGAGAACATTGCTGCGCTCCTCGCTCCTCAGTCTGGTTTCTACTATGACATCTGGGTCGATGGGGAAAAGTTTTTGACTTCAGAACCACCTGAAGTAGTTCAGGCACGAAATGACAATTCTCATGGTACAAACTTTCCAGATTCCCCCGAGCCTATCTATGGAACTCAGTTCTTGCCAAGGAAATTCAAAATTGCCGTTACTGTGCCAACTGATAACTCGGTGGATATTCTCACGAATGATATTGGTGTTGTTGTTGTTATGGATGATGATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGAATGGGAAGAACTCATAGGTTAGAAACCACTTTTCCTCGCTTGGCCGAACCATTAGGTTATGTACCAAAGGAGGATATTTTGTATGCAGTGAAAGCCATTGTTGTTACACAACGAGAAAATGGGAGAAGAGATGACCGCAAGTATAGTAGATTGAAATATTTGATAAGCTCTTGGGGAATTGAAAAGTTTAGAGGCGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGGGCGATGGCAAGTTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGTGGAAAGATGAAAAAGACATTGAGGGAGGTTATTGAGAAATATAATTTGAATGCAAGAATCACTCCAAATCAGAATATCATCTTGACTGATGTTCGTGCTGCATGGAAGCGTCCAATTACAACCACTCTTGCTCAAGCTGGTTTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCTTTCCCATTATGTCCTCTGGCAATTACTGAAGCTGAGCGTGGGATACCTAACATTCTTAAGCGGATTCGTGCTGTTTTTGATAAGGTTGGCCTGAAGTATAGTGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCTGAGCTTGGACTAGTTGGTGATGGCCCAAATAGCTATCAGATTTGGCTTGGAGGAAACCATAAACAAACATCATTAGCTCGAAGTTTCATGGACAGGGTGAAGCTTCTAGACCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACAGAATGGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTAGCACCATCACGCCACAACCTCAAGCTTTTTGCTGATAAGGAGACATATGAAGCAATGGATGAATTAGCAAAGCTTCAAAACAAGAATGCTCATCAGTTGGCCATGGAAGTTATCCGTAATTATGTTGCTACCAACCAAAATGGAAAGGGTGAATAA 2067 0.4446 MTTSFGGPATTSAPLKDTKLQIPSFHCFSSASASALSRNALSLPSSTRSFSLIRAVSTPAQSETATVKRSKVEIFKEQSNFIRYPLNEDMLTDAPNIGEAATQLIKFHGSYQQYNREERGSRSYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMATIIRNMGSTLGACGDLNRNVLAPAAPLVRKDYLFAQQTAENIAALLAPQSGFYYDIWVDGEKFLTSEPPEVVQARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVMDDDGEPQGFNIYVGGGMGRTHRLETTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRLKYLISSWGIEKFRGVVEQYYGKKFEPFRALPEWEFKSYLGWHEQGDGKFFYGLHVDNGRIGGKMKKTLREVIEKYNLNARITPNQNIILTDVRAAWKRPITTTLAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRAVFDKVGLKYSESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNHKQTSLARSFMDRVKLLDLEKVLEPLFYYWKQKRQSKESFGDFTNRMGFEKLKEYIEKWEGPVVAPSRHNLKLFADKETYEAMDELAKLQNKNAHQLAMEVIRNYVATNQNGKGE* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0166 688 PRINTS Sirohaem Fe-binding site signature 493 511 IPR006066 GO:0016491|GO:0020037|GO:0051536
Gso12g0166 688 PRINTS Sirohaem Fe-binding site signature 542 560 IPR006066 GO:0016491|GO:0020037|GO:0051536
Gso12g0166 688 Gene3D Sulfite Reductase Hemoprotein, domain 1 489 636 IPR045854 -
Gso12g0166 688 Pfam Nitrite and sulphite reductase 4Fe-4S domain 492 631 IPR006067 GO:0016491|GO:0020037|GO:0051536
Gso12g0166 688 Pfam Nitrite and sulphite reductase 4Fe-4S domain 219 397 IPR006067 GO:0016491|GO:0020037|GO:0051536
Gso12g0166 688 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 1 634 IPR045169 GO:0016491|GO:0020037|GO:0051536
Gso12g0166 688 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 491 642 IPR045854 -
Gso12g0166 688 Gene3D Sulfite Reductase Hemoprotein;Domain 2 401 485 - -
Gso12g0166 688 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 412 484 IPR036136 GO:0016491
Gso12g0166 688 TIGRFAM sir: sulfite reductase, ferredoxin dependent 60 632 IPR011787 GO:0020037|GO:0050311|GO:0051539
Gso12g0166 688 PANTHER BNAA01G31570D PROTEIN 1 634 - -
Gso12g0166 688 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 542 558 IPR006066 GO:0016491|GO:0020037|GO:0051536
Gso12g0166 688 Gene3D Sulfite Reductase Hemoprotein, domain 1 193 400 IPR045854 -
Gso12g0166 688 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 125 182 IPR005117 GO:0016491
Gso12g0166 688 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 415 468 IPR005117 GO:0016491
Gso12g0166 688 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 66 193 IPR036136 GO:0016491
Gso12g0166 688 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 194 409 IPR045854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0166 Gso-Chr12 1362264 1366780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0166 K00392 - gmx:100790764 1363.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0166 12 1362264 1366780 Gso11g0791 11 7097625 7102069 GST