Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0159 ATGGGTCAAGCTTTTCGGAAGCTCTTCGACACCTTCTTCGGCAACACCGAGATGCGGGTTGTGATGCTTGGTCTAGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAACACTGATGGTTTGATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGAAAGTGGCACATACAAGGCACTTGTGCTCTTCGGGGAGATGGTCTTTATGAGGGCTTGGACTGGTTGTCCACAACTCTGAAGGAGAGAAGAGCTGCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAA 588 0.4371 MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTVINDPFMLHSIILVFANKQDLKGAMSPREICEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSTTLKERRAAGYSSIGLGTSSF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0159 195 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Gso12g0159 195 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Gso12g0159 195 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Gso12g0159 195 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Gso12g0159 195 Pfam ADP-ribosylation factor family 6 176 IPR006689 GO:0003924|GO:0005525
Gso12g0159 195 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Gso12g0159 195 SMART arf_sub_2 1 181 - -
Gso12g0159 195 SMART sar_sub_1 9 177 IPR006689 GO:0003924|GO:0005525
Gso12g0159 195 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 195 IPR024156 GO:0005525
Gso12g0159 195 Gene3D - 3 186 IPR027417 -
Gso12g0159 195 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Gso12g0159 195 PANTHER ADP-RIBOSYLATION FACTOR B1B 1 195 - -
Gso12g0159 195 TIGRFAM small_GTP: small GTP-binding protein domain 16 137 IPR005225 GO:0005525
Gso12g0159 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0159 Gso-Chr12 1316581 1320114 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0159 K07937 - gmx:100816276 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0159 12 1316581 1320114 Gso11g0783 11 7044434 7048153 GST