Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0157 ATGGCAGAGAATCTGATAGCGCCGAAGCTTCCCGTCGAAGGAAAGCGCAACATTCTCATCACCAGTGCCTTGCCTTACGTCAACAACGTTCCTCACCTCGGCAACATCATTGGATGCGTGTTGAGTGCTGATGTATTCGCTCGCTACTGTCGGCTTCGCGGTTATAACGCTATTTACATCTGCGGTACTGATGAGTATGGAACTGCCACTGAGACTAAAGCCATGGAAGAAAACTGCTCTCCCAAAGAGATTTGTGACAAATATCATGCTATTCATAAGGAGGTCTACAATTGGTTCAATATAAGTTTTGATGAATTTGGACGGACGTCATCCCCTGAGCAAACTGAAGTTTGCCAAGCAATTTTCAGAAAGATATTCGAAAACAAGTGGCTATCCGAGAACACAATGCAGCAGCTTTACTGCAACACCTGTGAAAGGTTCTTGGCTGATAGGCTTGTGGAGGGAACCTGCCCGACTCCTGGCTGCGAGTATGATTCTGCCCGAGGAGACCAGTGTGAGAAGTGTGGAAAGCTTTTAAATCCAACAGAATTGAAAAATCCCAGATGCAAGGTTTGTCAGAAAACTCCTCATATTCGTGATACAGATCACTTGTTTCTTGAACTCCCCCTATTAAAAGATAGATTGGAAAAATACATCAGTGAGATGTCTGTGGTTGGTGGATGGAGTCAAAATGCTATCCAAACAACAAATTCATGGCTTAGAGAAGGGTTAAAGCCACGCTGTATTACGAGGGATCTAAAGTGGGGGGTTCCTGTTCCACATGAAAAATACAGTGACAAGGTTTTCTATGTTTGGTTTGATGCACCTATTGGATATGTCTCAATTACTTCGTGCTACACACGTGAATGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGCTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCACACTGTGATGTTTCCATCTACTCTACTTGGAACTAGTGAAAATTGGACTTTAATGAAGACTATTAGTGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAGAGCAAAGGTATTGGGGTTTTTGGTAATGATGCGAAAGATACTAATATTCCAGTTGAAGTATGGAGATATTACTTGCTCACAAATAGGCCGGAGGTATCAGATACGTTATTTACATGGCCGGACTTGCAAGCTAAACTAAATAGTGAGTTACTGAATAATTTGGGCAACTTTATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGGCAAGGATATGATTCCATTATCCCCTCTGTTCCTGATAATGTAAGTGGTGACTCCCATGGTCCGACCAAAAAGTTGGCTGATAAAGTTGCTGCATATATAGACCAATACATAGAAGCAATGGAGAAGGTTAAACTGAAGCAAGGGTTGAAAACTGCAATGAGCATATCCAGCGAGGGAAATGCATATCTGCAGGAAGCTGAATTCTGGCGCCTCTACAAGGAAAACAAATCTCTCTGCTCTCTTGTCATGAAAACTGCAGCTGGGATTGTATATCTTCTTGCTTGTTTGTTAGAACCTTTTATCCCATCTTTCACTCTTGAAGTATTTAAGCAGCTAAATTTGCCTGCGGATACACATGTTTCACTTAGTGATGATAAAGGAGATGTTGATAGGGTAAAAAGACCCTGGGATATCATAAGTGCTGGTCATAAAATTGGAACACCCAAGCCATTGTTCAGGGAACTGAAAGATGAAGAGGTGGAGTTCTACAGGAAGAAGTTCGCAGGAAGTCAAGCTGATAGGATTGTGCGTGCAGAGGCCGAAGCTCAGAATGTTGCTGAGCAACTGAAGAAAACGAAAGTTTCAGATGGCAATGGAAAGAAAAAACCAGGAAAATCATCAAATGAAGCCAAAAATAAAGCTGCTGCTGAACCAGATATTACCATCACAAGGCTTGATATCCGGGTTGGCCTCATAATAAAAGCTCAAAAACATCCTGATGCAGATGCACTATATGTTGAAGAGATTGACGTCGGTGAAGAACAGACCAGAACTGTTGTCAGTGGGCTTGTCAAATTTATACCACTCGATGAAATGCAGAACCGAAAGGTCTGTGTTCTTTGCAACCTAAAGCCAGTAACCATGAGGGGCATTAAATCTCAAGCAATGGTTCTTGCTGCTTCCGATGGTGATCACACCAAGGTTGAGTTGGTTGAGCCTCCCAGTTCTGCTCAACCAGGAGAAAGAATTACATTCCCTGGGTATGAAGGTAATCCTGATGAACTCTTAAACCCAAAGAAGAAAGTTTGGGAAACATTGCAAGTCGATTTGCACACAAATGAGGAACTGGTGGCATGCTACAAAAATGTTCCACTCACCACATCAGCTGGCGTTTGCAAGGTTTCATCCATAAGCTGTGGATCCATAAGGTAG 2412 0.4241 MAENLIAPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEENCSPKEICDKYHAIHKEVYNWFNISFDEFGRTSSPEQTEVCQAIFRKIFENKWLSENTMQQLYCNTCERFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKNPRCKVCQKTPHIRDTDHLFLELPLLKDRLEKYISEMSVVGGWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITSCYTREWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSIIPSVPDNVSGDSHGPTKKLADKVAAYIDQYIEAMEKVKLKQGLKTAMSISSEGNAYLQEAEFWRLYKENKSLCSLVMKTAAGIVYLLACLLEPFIPSFTLEVFKQLNLPADTHVSLSDDKGDVDRVKRPWDIISAGHKIGTPKPLFRELKDEEVEFYRKKFAGSQADRIVRAEAEAQNVAEQLKKTKVSDGNGKKKPGKSSNEAKNKAAAEPDITITRLDIRVGLIIKAQKHPDADALYVEEIDVGEEQTRTVVSGLVKFIPLDEMQNRKVCVLCNLKPVTMRGIKSQAMVLAASDGDHTKVELVEPPSSAQPGERITFPGYEGNPDELLNPKKKVWETLQVDLHTNEELVACYKNVPLTTSAGVCKVSSISCGSIR* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0157 803 Pfam tRNA synthetases class I (M) 18 412 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso12g0157 803 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 7 803 - -
Gso12g0157 803 MobiDBLite consensus disorder prediction 613 628 - -
Gso12g0157 803 PRINTS Methionyl-tRNA synthetase signature 20 33 IPR033911 GO:0004825|GO:0006431
Gso12g0157 803 PRINTS Methionyl-tRNA synthetase signature 53 67 IPR033911 GO:0004825|GO:0006431
Gso12g0157 803 PRINTS Methionyl-tRNA synthetase signature 101 112 IPR033911 GO:0004825|GO:0006431
Gso12g0157 803 PRINTS Methionyl-tRNA synthetase signature 269 280 IPR033911 GO:0004825|GO:0006431
Gso12g0157 803 PRINTS Methionyl-tRNA synthetase signature 304 319 IPR033911 GO:0004825|GO:0006431
Gso12g0157 803 PRINTS Methionyl-tRNA synthetase signature 399 410 IPR033911 GO:0004825|GO:0006431
Gso12g0157 803 Hamap Methionine--tRNA ligase [metG]. 16 586 IPR023458 GO:0004825
Gso12g0157 803 CDD MetRS_core 17 387 IPR033911 GO:0004825|GO:0006431
Gso12g0157 803 SUPERFAMILY Nucleic acid-binding proteins 643 787 IPR012340 -
Gso12g0157 803 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 153 189 IPR029038 -
Gso12g0157 803 SUPERFAMILY Nucleotidylyl transferase 15 399 - -
Gso12g0157 803 Gene3D - 401 574 - -
Gso12g0157 803 Gene3D - 640 803 IPR012340 -
Gso12g0157 803 ProSiteProfiles tRNA-binding domain profile. 641 744 IPR002547 GO:0000049
Gso12g0157 803 Pfam Putative tRNA binding domain 647 742 IPR002547 GO:0000049
Gso12g0157 803 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 25 36 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso12g0157 803 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 404 588 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso12g0157 803 CDD Anticodon_Ia_Met 396 532 IPR041872 -
Gso12g0157 803 Pfam Anticodon binding domain of methionyl tRNA ligase 441 591 IPR041872 -
Gso12g0157 803 TIGRFAM metG: methionine--tRNA ligase 18 539 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Gso12g0157 803 Gene3D - 153 189 IPR029038 -
Gso12g0157 803 PANTHER METHIONINE--TRNA LIGASE 7 803 IPR023458 GO:0004825
Gso12g0157 803 Coils Coil 595 615 - -
Gso12g0157 803 CDD tRNA_bind_EMAP-II_like 640 744 - -
Gso12g0157 803 MobiDBLite consensus disorder prediction 608 635 - -
Gso12g0157 803 Gene3D HUPs 17 400 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0157 Gso-Chr12 1294718 1300532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0157 K01874 - gmx:100809861 1634.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0157 12 1294718 1300532 Gso11g0781 11 7025010 7028495 GST