Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0155 ATGGCATTTGATCCCGTGCAACCCGTCGCAAAGAAAGCAAGGTCAGGTGGTGAGATTGTGAGTGCAAGAGAGCCTCTGCTTAATGGGGTTCATGACTCTGAAAGCTATTCCGTCTCTGCTGCAATTCTCCCATTTCTCTTCCCAGCTTTGGGTGGCCTACTATTTGGCTATGATATTGGTGCCACATCTTCGGCAACCATTTCCATTGAGTCACCAACATTAAGTGGAGTATCTTGGTACAAGTTGTCTTCTGTTGAAATTGGTCTTCTTACTAGTGGATCATTGTATGGTGCCTTAATTGGCTCCGTGTTGGCCTTCAATGTTGCTGACTTCTTAGGTAGAAGAAAGGAGCTGATTGGATCTGCAGTAGTTTATCTTGTTGGAGCCCTTGTAACAGCATTAGCTCCTAATTTTCCTGTATTGGTGCTTGGGAGACTTGTATTTGGCACAGGAATTGGACTGGCAATGCATGCTGCTCCAATGTACATTGCAGAGACAGCTCCAACACCAATACGTGGACAACTAATATCTCTAAAAGAGTTCTTTATAGTACTTGGGATGGTTGCAGGATATGGAATTGGTAGCTTGTTCGTTGAAACTGTAGCTGGGTGGCGGTATATGTATGGAGTTAGTAGTCCTGTGGCAATAATCATGGGACTTGGAATGTGGTGGCTCCCAGCTTCTCCTAGATGGTTACTTTTACGTGCTATACAAGGAAAAGGGGATGTTCAGAATTCAAAAGACATAGCAATTCGTAGTTTGTGCCAGCTTCAAGGTCAAGCTTTTAATGATTCCATTCCTTGGCAAGTAGATGAGATTCTGGCAGAACTTTCTTATCTAGGTGAAGAAAAAGAAGCTACCTTTGGAGAACTGTTCCAAGGAAAATGCTTGAAAGCCCTCTGGATTGGTGCAGGATTGGTCTTGTTTCAGCAGATCACAGGGCAACCTAGTGTGCTCTACTATGCTGGATCAATCTTTCAGAGTGCAGGATTCTCTGGAGCATCTGATGCAACCCGAGTCTCTATTCTCCTTGGGGTTTTTAAGTTGATTATGACTGGAGTTGCTGTTGTCGTTGTTGATAAACTTGGAAGAAGGCCTTTACTACTTGGGGGAGTTTCAGGGATAGTGATCTCTTTATTCTTTCTGGGTTCATATTACATTTTCTTGGATAATACACCAGTTGTTGCTGTAGTTGGTCTGCTGTTGTACGTAGGCAGTTATCAGATTTCCTTTGGTCCAATTGGTTGGCTAATGATAGCAGAGATTTTCCCCTTGCGCCTAAGAGGTCGAGGACTAAGTATAGCTGTACTCGTCAATTTTGGTGCAAATGCCCTGGTGACATTTGCTTTTTCCCCACTGAAGGCATTATTGGGAGCAGGAATTTTGTTTTACACATTTGGTGTAATAGCGGTGACATCTCTTGTATTCATATACCTTGTTATACCAGAAACCAAGGGGCTTACACTAGAGGAGATTGAGGCCAAATGCCTCTAA 1494 0.4337 MAFDPVQPVAKKARSGGEIVSAREPLLNGVHDSESYSVSAAILPFLFPALGGLLFGYDIGATSSATISIESPTLSGVSWYKLSSVEIGLLTSGSLYGALIGSVLAFNVADFLGRRKELIGSAVVYLVGALVTALAPNFPVLVLGRLVFGTGIGLAMHAAPMYIAETAPTPIRGQLISLKEFFIVLGMVAGYGIGSLFVETVAGWRYMYGVSSPVAIIMGLGMWWLPASPRWLLLRAIQGKGDVQNSKDIAIRSLCQLQGQAFNDSIPWQVDEILAELSYLGEEKEATFGELFQGKCLKALWIGAGLVLFQQITGQPSVLYYAGSIFQSAGFSGASDATRVSILLGVFKLIMTGVAVVVVDKLGRRPLLLGGVSGIVISLFFLGSYYIFLDNTPVVAVVGLLLYVGSYQISFGPIGWLMIAEIFPLRLRGRGLSIAVLVNFGANALVTFAFSPLKALLGAGILFYTFGVIAVTSLVFIYLVIPETKGLTLEEIEAKCL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0155 497 Pfam Sugar (and other) transporter 47 494 IPR005828 GO:0016021|GO:0022857|GO:0055085
Gso12g0155 497 CDD MFS_GLUT10_12_Class3_like 47 492 - -
Gso12g0155 497 ProSitePatterns Sugar transport proteins signature 1. 355 371 IPR005829 GO:0016021|GO:0022857|GO:0055085
Gso12g0155 497 Gene3D MFS general substrate transporter like domains 35 495 IPR036259 -
Gso12g0155 497 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 15 497 - -
Gso12g0155 497 ProSitePatterns Sugar transport proteins signature 1. 105 122 IPR005829 GO:0016021|GO:0022857|GO:0055085
Gso12g0155 497 SUPERFAMILY MFS general substrate transporter 45 493 IPR036259 -
Gso12g0155 497 PRINTS Sugar transporter signature 52 62 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso12g0155 497 PRINTS Sugar transporter signature 142 161 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso12g0155 497 PRINTS Sugar transporter signature 310 320 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso12g0155 497 PRINTS Sugar transporter signature 397 418 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso12g0155 497 PRINTS Sugar transporter signature 420 432 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso12g0155 497 TIGRFAM SP: MFS transporter, sugar porter (SP) family 40 492 IPR003663 GO:0016020|GO:0022857|GO:0055085
Gso12g0155 497 ProSiteProfiles Major facilitator superfamily (MFS) profile. 44 485 IPR020846 GO:0022857
Gso12g0155 497 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 1 15 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0155 Gso-Chr12 1274120 1282809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0155 1 497 Organic Solute Cotransporters AT5G17010 74.553 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0155 - - gmx:100785992 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0155 12 1274120 1282809 Gso11g0780 11 7015325 7023830 GST