Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0148 ATGAGTGACAATTTGATGGGAAAAGTCAACGCTTTGGGGGAGCGTCTCAAAATTGGTGGGGCTGAGGTGGGTCGGAAGATGAGTGCTGGCATGAGTTCTGTGAGCTTCAAGGTCAAGGAATTTTTCCAAGATTCAGGCCATGCTGGTAAACTCGTTGGGGAAGCTACCTCTGAGGCCCTACATGAGCCTGATTGGGCTACAATTCTTCATATATGTGACTTGATCAATGCTGATCAACTTAACACTGCTGAATTGGTACGTGCAATTAAGAAAAGGGTCGTGGCCAAGAGTCCTAGAGGTCAGTATCTGGCTTTGGTTTTGCTTGAAGCGTTGGTCAAGAACTGTGACAAGGCTTTCTTGGAGGTGGCAACTGAGAGAGTCCTTGATGAGATGGTCAAGCTCATTGATGACCCTCAGACTATTCTTAATAACCGGAATAAGGCTTTGATAATGATTGAGGCATGGGGAGAGTCAACCATTGAGCTTCGCTATCTGCCTGTCTATGCAGAAACTTACAAGAGTTTGAAATCAAGGGGTATTCGATTCCCTGGCCGTGACAACGAAAGCTTGGCTCCTATATTTACTCCTCCTCACTCTGCCATTACTCCAGAGGCTGATGTCAGTTTTGCAGATCTTATTCAGTATGATATTCATGGGCAAAGCTTAACCTCTGTTACTCCTCCTCGTTCTGCCACTACTCCAGAGGCTGATGTCAGTCTTGCACATCTTATGCCGCAAGATATTCATATGCAAAGTTTTAAGTCTGAACAAATAAAGGAAACATTTGATGTCGCGAGAAATAGCATTGAGCTTCTTTCTACTGTGTTGTCTTCTACAATGCAGCAGAATGTGTTGAAGGATGAGTTGACCACCACATTAGTACAACAGTGTCGTCAGTCCCAGACTAGTGTCCATAGAATCGTTGAGACTGCTTGGGATAATGAAGCAGTGCTTGTTGAGGCCTTGAATGTTAACGATGAGATTCAGAAGGTTTTCTCCAAATATGAAGAGCTGAAGAAGGAGCAGAAGGAGCCTACCGTTGTTCCATTTGAAGCTGAACCGGTTGTTACCAAAGAGGAAGCACTGATTAGAAAGCCAGGTTCAAGAATTGGAGTCCATGGAGGGAGCCACGATGACATGTTGGATGATCTTGATGAGATGATTTTTGGGAAAAAGGGTAGGGATGATGCATTTGAAGGAGGGCAACATCCAAAGAAACAACAATCATCATCAAAAGATGACCTCATCTCCTTCTAA 1257 0.4423 MSDNLMGKVNALGERLKIGGAEVGRKMSAGMSSVSFKVKEFFQDSGHAGKLVGEATSEALHEPDWATILHICDLINADQLNTAELVRAIKKRVVAKSPRGQYLALVLLEALVKNCDKAFLEVATERVLDEMVKLIDDPQTILNNRNKALIMIEAWGESTIELRYLPVYAETYKSLKSRGIRFPGRDNESLAPIFTPPHSAITPEADVSFADLIQYDIHGQSLTSVTPPRSATTPEADVSLAHLMPQDIHMQSFKSEQIKETFDVARNSIELLSTVLSSTMQQNVLKDELTTTLVQQCRQSQTSVHRIVETAWDNEAVLVEALNVNDEIQKVFSKYEELKKEQKEPTVVPFEAEPVVTKEEALIRKPGSRIGVHGGSHDDMLDDLDEMIFGKKGRDDAFEGGQHPKKQQSSSKDDLISF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0148 418 Gene3D - 249 347 IPR038425 -
Gso12g0148 418 ProSiteProfiles GAT domain profile. 253 340 IPR004152 GO:0035091|GO:0043130
Gso12g0148 418 CDD GAT_GGA_like_plant 261 338 - -
Gso12g0148 418 SUPERFAMILY ENTH/VHS domain 47 183 IPR008942 -
Gso12g0148 418 MobiDBLite consensus disorder prediction 392 410 - -
Gso12g0148 418 Pfam VHS domain 50 179 IPR002014 GO:0035091|GO:0043130
Gso12g0148 418 PANTHER TOM1-LIKE PROTEIN 1 1 223 IPR044836 GO:0035091|GO:0043130|GO:0043328
Gso12g0148 418 PANTHER TOM1-LIKE PROTEIN 1 225 418 IPR044836 GO:0035091|GO:0043130|GO:0043328
Gso12g0148 418 MobiDBLite consensus disorder prediction 392 418 - -
Gso12g0148 418 CDD VHS 48 177 - -
Gso12g0148 418 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Gso12g0148 418 Coils Coil 321 341 - -
Gso12g0148 418 PANTHER TOM1-LIKE PROTEIN 1 1 223 - -
Gso12g0148 418 PANTHER TOM1-LIKE PROTEIN 1 225 418 - -
Gso12g0148 418 Pfam GAT domain 266 340 IPR004152 GO:0035091|GO:0043130
Gso12g0148 418 Gene3D - 43 200 IPR008942 -
Gso12g0148 418 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
Gso12g0148 418 SUPERFAMILY GAT-like domain 181 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0148 Gso-Chr12 1225238 1227834 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0148 - - gmx:100784925 818.15