Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0115 ATGGCTGTTGAGACTTCTGATAAACCAAATTTACCCCATGATTTTGAGGATGATGATGATGGGCCAGTAATTTACAAAAGGTACTCATCATCTAAGAAAAATCAATCGCATTCAGAAGTAAGGAAGTCAAGTTCTCACAGTCATGATGGACAGTCTTATAGGCAGATTTCTAATGCACCTTCTTCAAGTGGCCAAACTTCCTGCCTTCAGAAAGGTAATACTGTCCCATCTGCCAAGCCATCACCTGTGAAGCCTTCTGTAGGCATCTCCAAAGCTTCTAAATCTCTTGTCAACACCTCCTCCACGAAGTTGCCTGTAGCAAATTCAAAATCACCTTCTTTGGGAGATAGACAGAAAATGTCCGTAGATATTAAGGGGGAACCAAAAACTATTGAACACCATGCTAAAAATTTCGTTGAAGATTCAGAAGATGATGAGGATAATAAACCGTTGAGTTTTAGGTTGAAGAATTCTAACCATGATAACAAAGTGACCTCTGTTATTGCCAAAAAATCTTCTGAAGACTCTGATGATGATGTCCCTTTGGCAAAAAAGTTATACCGTAATTCCAATTTGGGAACAACTAGCAGTAACCATGATGACTCCAATCAGAAGAAGCCTATTTCTAAAATTCAGAAAGAGCAGAAAAATGGTTCTGGTATGAGTAATAAACTAGATAGGCCATCTCCATTGCCAGCTAAGAGACCACTAGATAATAGTAATTCCTTGCACCCCTCTGTTAAGAAGTCAAAGGTCTTAGATCCAGTTGCATCTATCAAATCTAAGGCAGTCTCTGTGAAACATGAACTGAAGGTAGAGGATGATGATGATGATGATGATATTCCTATTTCCCAGAGAATAAAGAAATCAGCAATGTCAGGTGATAAATCATCTTCCATGAAGAAGGTGCTGACAAAGGTTACTAAAGTTAATAAGCCTGGTTCAAAACCTTTTAAGAAACAGATAAAGAAGACAGTTAAAAAATCAGGCAGTGGTTCAGAATATTCTAAATCTTCAAAAATTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTCCCTCCTCCATACCAGCCGCATGGGGTAAAGATGTTATATAAGGGGAGACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGAGTACATGCAGAAAGATAAATTCAAGGAAAATTTCTGGAATGACTGGCGAAAGTTGCTTGGAAGAAATCATGTAATCCAGAATTTGAAAGATTGTGATTTTACTCCAATCTATGACTGGTACCAAAGTGAGAAGGACAAGAAGAAACAAATGACTACAGAAGAGAAGAAGGCTTTGAAGGAAGAGAAAATGAAACTAGAGGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAAGAGAAGGTTGGGAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGAGGAGAGCACCCCAAGATGGGAAAATTGAAAAAACGCATTCATCCAGGTGATATCACAATTAATATTGCAAAGGATGCCCCAATTCCTGAATGTCCTATTCCTGGCGAAAGGTGGAAGGAGATAAGACATGATAATACAGTTACTTGGTTAGCCTATTGGAGTGACCCTATCAATCCCAAGCTATTCAAATATGTGTTTCTGGCTGCTAGTAGTTCCTTGAAGGGGCAGAGCGACAAGGAAAAGTATGAGAAAGCTAGGACGTTAAAGGATTATATAGGGAATATTAGGTCTGCATACACAAAAGATTTTACCAGTAAAGATATTACAAAGCAGCAAATTGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAATGTGACAAGAGAACCCCCCAACAAACTTAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTACGAAAATACGGTTGAGGTTGAGCTTCCTGTTTATAATGCAATTTTGAAGTTCCAAAAAGATAAAAAGCCTGGTGATGATCTTTTCGATAAGCTGGATACAAGTAAACTAAATGCTCATCTTAAGGAACTCATGCCCGGTCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCGATCACATTGGATGTTATGTTGAATAAGGAAACTAAAGATGGAGATGTTGGGGAAAAGATTGTTGTTTATCAACATGCAAATAAACAGGTTGCTATCATTTGTAATCATCAACGCAGTGTTTCAAAATCTCATACTGCACAAATGTCAAAGTTAACTGAAAAAATTGATGAACTTCAGGCTGTTCTGAAAGAGCTGAAAACGGATTTAGACAGGGCAAGGAAAGGAAAGCCCCCTTCGAAGAGTTCAGATGGAAAGAGAAAAAAGAACTTGAGTCCCGAAATGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTGAGAAAATGCAACGTGATATGAAGACAAAAGAAGATCTGAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCTAGGATTACAGTTGCCTGGTGCAAAAGGCATGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTGCTGGCGAAATTCTGCTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA 2685 0.3873 MAVETSDKPNLPHDFEDDDDGPVIYKRYSSSKKNQSHSEVRKSSSHSHDGQSYRQISNAPSSSGQTSCLQKGNTVPSAKPSPVKPSVGISKASKSLVNTSSTKLPVANSKSPSLGDRQKMSVDIKGEPKTIEHHAKNFVEDSEDDEDNKPLSFRLKNSNHDNKVTSVIAKKSSEDSDDDVPLAKKLYRNSNLGTTSSNHDDSNQKKPISKIQKEQKNGSGMSNKLDRPSPLPAKRPLDNSNSLHPSVKKSKVLDPVASIKSKAVSVKHELKVEDDDDDDDIPISQRIKKSAMSGDKSSSMKKVLTKVTKVNKPGSKPFKKQIKKTVKKSGSGSEYSKSSKILPSSGDGQKKWTTLVHNGVIFPPPYQPHGVKMLYKGRPVDLTPEQEEVATMYAVMRDTEYMQKDKFKENFWNDWRKLLGRNHVIQNLKDCDFTPIYDWYQSEKDKKKQMTTEEKKALKEEKMKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPGDITINIAKDAPIPECPIPGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARTLKDYIGNIRSAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREPPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDVMLNKETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHTAQMSKLTEKIDELQAVLKELKTDLDRARKGKPPSKSSDGKRKKNLSPEMLEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0115 894 Gene3D DNA Topoisomerase I, domain 2 347 562 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Gso12g0115 894 SUPERFAMILY DNA breaking-rejoining enzymes 565 891 IPR011010 GO:0003677
Gso12g0115 894 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 351 562 IPR008336 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 PANTHER DNA TOPOISOMERASE I 139 894 - -
Gso12g0115 894 MobiDBLite consensus disorder prediction 328 347 - -
Gso12g0115 894 PRINTS Eukaryotic DNA topoisomerase I signature 491 500 IPR001631 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 PRINTS Eukaryotic DNA topoisomerase I signature 607 626 IPR001631 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 PRINTS Eukaryotic DNA topoisomerase I signature 630 644 IPR001631 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 PRINTS Eukaryotic DNA topoisomerase I signature 652 668 IPR001631 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 PRINTS Eukaryotic DNA topoisomerase I signature 710 724 IPR001631 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 PRINTS Eukaryotic DNA topoisomerase I signature 847 858 IPR001631 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 Pfam C-terminal topoisomerase domain 826 894 IPR025834 -
Gso12g0115 894 MobiDBLite consensus disorder prediction 1 347 - -
Gso12g0115 894 MobiDBLite consensus disorder prediction 789 820 - -
Gso12g0115 894 MobiDBLite consensus disorder prediction 49 80 - -
Gso12g0115 894 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 349 564 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Gso12g0115 894 MobiDBLite consensus disorder prediction 290 305 - -
Gso12g0115 894 MobiDBLite consensus disorder prediction 9 48 - -
Gso12g0115 894 Coils Coil 821 841 - -
Gso12g0115 894 MobiDBLite consensus disorder prediction 91 116 - -
Gso12g0115 894 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 840 858 IPR018521 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 Coils Coil 763 797 - -
Gso12g0115 894 MobiDBLite consensus disorder prediction 120 156 - -
Gso12g0115 894 Gene3D Topoisomerase I; Chain A, domain 3 565 713 IPR014711 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 Gene3D - 714 894 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Gso12g0115 894 CDD Topo_IB_C 571 764 IPR013500 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 Pfam Eukaryotic DNA topoisomerase I, catalytic core 565 790 IPR013500 GO:0003677|GO:0003917|GO:0006265
Gso12g0115 894 Gene3D - 367 450 IPR013034 GO:0003917|GO:0006265
Gso12g0115 894 MobiDBLite consensus disorder prediction 188 202 - -
Gso12g0115 894 SMART topeu 491 867 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Gso12g0115 894 Coils Coil 448 468 - -
Gso12g0115 894 MobiDBLite consensus disorder prediction 167 184 - -
Gso12g0115 894 CDD Topoisomer_IB_N 351 563 - -
Gso12g0115 894 PANTHER DNA TOPOISOMERASE I 139 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0115 Gso-Chr12 982736 991283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0115 K03163 - gmx:100799837 1622.45