Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0097 ATGAGATACCATTACCCACCTCGTAATAACATTCTTGGAGAACACAACATTCTGTTCCTCAAAAGCTTCACGATATTGTTCCTTAGTTGCATAGCCATTCGGCTTAACTTGTGTCTTTCCAGCATCCCCTCTTCACTGAAATCACTTCCCCTAGGAGGGCATTTAAATTTTGATGAAGTTAGCCTAAGCCATGCAGCAAGGGACTTCGGCAACAGGTACCAATATCATCCAATGGCAGTGCTGCAACCAGAATCAGTTTCTGATATCGCATCCACCATAAAGCATATCTGGCTGATGGGTCCTAGCTCGCACCTCACGGTTGCAGCGAGGGGCCACGGCCACTCGCTGCAGGGACAGGCTCAAGCCCATGGAGGAGTTGTGATAAACATGGAATCACTCAAGGTCCCAGAAATGCAGGTACATGTTGATGTGGGAAACTCTCCTCCATACGTGGATGTCTCAGGTGGCGAATTGTGGATAAACATATTGCATGAGACTCTAAGGTACGGGTTGGCGCCAAGATCGTGGACAGACTACCTGCATCTGACAGTTGGAGGCACTCTCTCCAACGCTGGTGTCAGTGGCCAGGCATTTAGGCATGGTCCCCAAATAAGTAATGTTCAGCTGCTCGAGATTGTTACAGGAACAGGGGAGGTGGTGAACTGTTCCGCAGAGAATAATGGGGATCTCTTTCACAGCGTTCTTGGGGGGCTTGGCCAATTTGGCATTATAACCCGGGCAAGAATTGTCCTGGAGCCAGCACCTGCCATGGTAAAATGGATTAGAGTGCTGTACTCAGATTTCACAGCATTCACAAGAGACCAAGAAAGGTTAATATCTGCAGAAAACACCTTTGACTACATTGAAGGATTTGTGATAATAAACAGAACTGGTCTGTTAAATAACTGGAGATTATCCTTCAACCCACAAGACCCGGTTCAAGCTAGTCATTTCAAGTCGGATGGAAGAACTCTCTTCTGTCTTGAAATGGCCAAATACTTCAACGTGGAAGAAATCGATGCAGCAAATCAGGAAGTTGAGGAACATTTGTCCCGATTAAGCTACATCCCATCGACCCTTTTTTCAACAGAAGTCACATTTGTTGATTTCTTAGACAGGGTGCACATATCAGAGGTCAAGTTGCGTTCAAAAGGCTTGTGGGATGTTCCACATCCGTGGCTCAATCTTCTAATACCCAAAAGCCAAATACACAACTTCGCAGAAGTCGTCTTCGGGAATATCCTTACAGAAACTAGCAATGGCCCGGTCCTTATCTACCCAGTAAACAAATCAAAGTGGGACAACAGAACTTCTGTTGTGATTCCAGAGGAAGCTATTTTCTACTTAGTGGCATTTCTTACATCTGCAGTTCCATCTTCAACTGGAACTGACGGCCTAGAGCACATACTAAGTCAGAACAAAAGAATTTTAGAATTCTGTGAAAGTGCACAACTTGGAGTGAAGCAGTATTTGCCTCACTACAACACACAGCAAGAATGGAGGGCCCATTTTGGTCCTCACTGGGAGACTTTTCTGCAGAGAAAGTCTGTTTATGATCCATTAGCAATACTCGCTCCTGGCCAACGTATTTTTCAAAAAGCAATAACCTTCTCATGA 1617 0.4521 MRYHYPPRNNILGEHNILFLKSFTILFLSCIAIRLNLCLSSIPSSLKSLPLGGHLNFDEVSLSHAARDFGNRYQYHPMAVLQPESVSDIASTIKHIWLMGPSSHLTVAARGHGHSLQGQAQAHGGVVINMESLKVPEMQVHVDVGNSPPYVDVSGGELWINILHETLRYGLAPRSWTDYLHLTVGGTLSNAGVSGQAFRHGPQISNVQLLEIVTGTGEVVNCSAENNGDLFHSVLGGLGQFGIITRARIVLEPAPAMVKWIRVLYSDFTAFTRDQERLISAENTFDYIEGFVIINRTGLLNNWRLSFNPQDPVQASHFKSDGRTLFCLEMAKYFNVEEIDAANQEVEEHLSRLSYIPSTLFSTEVTFVDFLDRVHISEVKLRSKGLWDVPHPWLNLLIPKSQIHNFAEVVFGNILTETSNGPVLIYPVNKSKWDNRTSVVIPEEAIFYLVAFLTSAVPSSTGTDGLEHILSQNKRILEFCESAQLGVKQYLPHYNTQQEWRAHFGPHWETFLQRKSVYDPLAILAPGQRIFQKAITFS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0097 538 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 77 112 IPR006093 GO:0016491
Gso12g0097 538 SUPERFAMILY FAD-binding/transporter-associated domain-like 51 253 IPR036318 GO:0050660
Gso12g0097 538 Gene3D - 130 256 IPR016169 -
Gso12g0097 538 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 255 531 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gso12g0097 538 SUPERFAMILY FAD-linked oxidases, C-terminal domain 255 531 IPR016164 GO:0003824|GO:0050660
Gso12g0097 538 Pfam FAD binding domain 77 223 IPR006094 GO:0050660
Gso12g0097 538 PANTHER GULONOLACTONE OXIDASE 11 535 - -
Gso12g0097 538 ProSiteProfiles PCMH-type FAD-binding domain profile. 73 254 IPR016166 GO:0071949
Gso12g0097 538 Gene3D - 257 490 IPR016170 -
Gso12g0097 538 Gene3D - 62 531 IPR016167 -
Gso12g0097 538 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 11 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0097 Gso-Chr12 831682 834242 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0097 K00279 - gmx:100808619 1082.4