Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0094 ATGGATGGTTACGAAGCTACAAGAATTGTGTTTTCACGGATCCAAAACTTGGACCCTGAAAATGCTTCCAAAATCATGGGTGTACTTCTTCTTCAAGACCATGGTGAAAAGGAAATGATTAGACTAGCATTTGGTCCAGAAGCACTTGTTCACTCTGTGATTCTCAAAGCCCGCAAGGAGTTAGGTTTACCTTCGAACTCTCCGCCCACACCCTCCACTCCTCCTTCTCCTTCACCCTTTATTTCTAGGCAAAACTTAAACACTTCTTCAAGGCTCAGTGGCACCAATATCCCTCCTGCTCTCACTATCCCTAACCCTTCTTCATGGCCTACCATGTCTGAGCTTCAAACTCCTGATGATTTGATGAGTCCCAACCATTTAGTTGTTGGCTCTTCTACTTCTTCATTGTCCTTACCCTTTTATGCAAACGGAGGCTCAGATCCAATTGATGAGTTCCAACTTCAAGACCAGCTTGCTTTCCTGAATGATGGTTCTCCAACTAGTACTGCTCTTTCCCACAAGAACAACCCAGATATGTTTTACCCTAGTAACTCAGACTTGTCTTCAAGTCCTACTACTGCTGCTGACCCTACCCTTTTTCCTTCCTATGGTTGGGGAGGGTCTCTTCATCGTAGGAGTTGTTCAGTCAATGATGCTTGTTTGGGCACTGAGGACCCTAATTCTGGGTTGGGATGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAAAATGGGACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCTGATGCTGCAATGGTTGGCTCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTAAGATCCAAATCTGGTCAGCAACAAAGATTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCCACTTTTCCATACTCCCCTAAGTGCATGAATTTCCTGTTGCAGCAGCAACAAAATGATACCCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTTTGAACAGTCCTGGCATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGGGAGGAAGATGTTTCAAATTACTTCAGCATATATGGTCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTTACCTTTGTTTATCCAGAGACCGTGAAGCTTATTCTATCTAAAGGAAACCCTCATTTTGTGTGTGATGCACGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGTACAGGAAGCTGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGATTAGATGCTAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAGCTACAAAGTAGGAGGCTAATGGGTCTACAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTTTCCGCCGGAAGCCCAATTCCTTCCCCCACCCATTCTCCTAACATGTTCAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGGAGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTCAACAGCAGGTCAACATTTCTGTTGGCAAGGAAGTGGATGTCAATGGTGAGAATGGGTATGATGAAGGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGATGGAGACTTCATGGTTGCCTTCTCCAATGGATCTAATGAGGCCATTGATGCAGATGGCTTAGCTGCATCTGCCAACTCCAAATTTGGGACTAGCACATTACTTCCTGCAGCGTCTGCTCTTGACATGGGAACTTTCAAATCCTTTAATTGCCAAATACCAAGGTTCTCTTCTGGCCATGGAACTATTGGTATGTTCGCAGGCACCGGTGGACCGATTGGCATTTAG 2115 0.4558 MDGYEATRIVFSRIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFISRQNLNTSSRLSGTNIPPALTIPNPSSWPTMSELQTPDDLMSPNHLVVGSSTSSLSLPFYANGGSDPIDEFQLQDQLAFLNDGSPTSTALSHKNNPDMFYPSNSDLSSSPTTAADPTLFPSYGWGGSLHRRSCSVNDACLGTEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADAAMVGSPSKIEMMEQCHELLRSKSGQQQRLAAASQLMASSTFPYSPKCMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKLQQQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSAGSPIPSPTHSPNMFNQNLVPSFHITSEAPKESGSSSAPASIASVSVGQQQVNISVGKEVDVNGENGYDEGNGKQSSSHEDRDLQECLEHNLPDSPFASPTKADGDFMVAFSNGSNEAIDADGLAASANSKFGTSTLLPAASALDMGTFKSFNCQIPRFSSGHGTIGMFAGTGGPIGI* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0094 704 Gene3D - 224 310 - -
Gso12g0094 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 436 IPR000504 GO:0003723
Gso12g0094 704 SMART c3hfinal6 231 255 IPR000571 GO:0046872
Gso12g0094 704 ProSiteProfiles Zinc finger C3H1-type profile. 229 256 IPR000571 GO:0046872
Gso12g0094 704 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 692 - -
Gso12g0094 704 MobiDBLite consensus disorder prediction 61 108 - -
Gso12g0094 704 MobiDBLite consensus disorder prediction 585 609 - -
Gso12g0094 704 SUPERFAMILY CCCH zinc finger 232 254 IPR036855 GO:0046872
Gso12g0094 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 417 IPR000504 GO:0003723
Gso12g0094 704 MobiDBLite consensus disorder prediction 79 108 - -
Gso12g0094 704 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 692 - -
Gso12g0094 704 SMART rrm1_1 361 431 IPR000504 GO:0003723
Gso12g0094 704 Gene3D - 311 450 IPR012677 -
Gso12g0094 704 SUPERFAMILY RNA-binding domain, RBD 372 450 IPR035979 GO:0003676
Gso12g0094 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 254 IPR000571 GO:0046872
Gso12g0094 704 CDD RRM_AtC3H46_like 362 431 IPR034365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0094 Gso-Chr12 802886 807369 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0094 - - gmx:100801341 1387.09