Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0093 ATGGATAGTTACGAAGCTACAAGAATTGTGTTTTCAAGGATCCAAAACTTGGATGCTGAAAATGCTTCCAAAATCATGGGTTTACTTCTGCTTCAGGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCAGAAGCACTTGTTCACTCTGTGATTCTCAAAGCCCGCAAGGACTTGGGTTTACCTTCGAACTCTCCGCCCACACCCTCCACTCCTCCCTCTCCTTCACCCTTCATTTCTAGGCAAAACTCAAACACTTCTTCAAGACTCAGTGTCAGTGGTATCAACCTCCCTCCTCCTCTCACTATCCCAAACCCTTCTGCTTCATGGCCTACTATGTCTGAGCTTCAAACCGATTTGGTTGCTGGCTCTTCTACTTCTTTATCTTCCTTACCCTTCTATGCTAACGGAGGCTCGGATCCAATTGATGAGTTCCAACTTCAAGACCAGCTTTCTTTCCTGAATGATGGTTCTAATACTAGCATTTCTCACAAGAACAACCCAGATTTGTTTTACCCGACTTACTCAGACTTTTCTTCAAGTCCTACTACTGCTGCTGACCCTACCCTTTTTCCTTCCTATGGTTGGGGAGGGTCTCTTCATCGTAGGAGTTGTTCAGTCAATGATGCTTGTTTGGGCACTGAGGACCCTAATTCTGGGTTGGGATGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAAAATGGGACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCTGATGCTGCAATGGTTGGCTCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTACGATCCAAATCTGCTCAACAACAAAGATTGGCTGCTGCTTCTCAGCTCATGTCCTCTTCCACTTTTCCATACTCCCCTAAGTGCATGAATTTCCTGTTGCAGCAGCAACAGAATGATACCCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTTTGAACAGTCCTGGCATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGGGAGGAAGATGTTTCAAATTACTTCAGCATATATGGTCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTTACCTTTGTTTATCCAGAGACCGTGAAGCTTATTCTATCTAAAGGAAACCCTCATTTTGTGTGTGATGCACGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGTACAGGAAGCTGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGATTAGATGCCAGAGACCACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAGGCTGATTTGCAGCAAGCTCTTGAGCTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTGCACTGGAAGCCCAATTCCTTCCCCCACCCATTCTCCTAACATGTTCAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGGAGAGTGGTTCAACTTCTGCTCCAGCTGGTACTGCGTCAGTTTCTACTGGTCAACAGTCAGTCAACATTTCTGTTGGCAAGGAAGTGATGGTCAATGGCGAGGATGGATATGATGAAGGCAATGGCAGGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGTTTAGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTACTGGTCCTGGAGGCTTCATGGCTCCCTTCTCCAATGGACCTAATGAGGCCATTGATGCAGATGCCTCGGCTGCATCTGCCAACTCCAAATTTGGCACTGGCACATTACTTCCTGCAGCATCGGCTCTTGACATGGGAACTTTCAAATCCTTTAACTGCCAAATACCAAGGTTCTCTTCTGGTCATGGAACTATTGGGATGTTTGCTGGCACCGGTGGACCGATTGGCATTTAG 2103 0.4617 MDSYEATRIVFSRIQNLDAENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKDLGLPSNSPPTPSTPPSPSPFISRQNSNTSSRLSVSGINLPPPLTIPNPSASWPTMSELQTDLVAGSSTSLSSLPFYANGGSDPIDEFQLQDQLSFLNDGSNTSISHKNNPDLFYPTYSDFSSSPTTAADPTLFPSYGWGGSLHRRSCSVNDACLGTEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADAAMVGSPSKIEMMEQCHELLRSKSAQQQRLAAASQLMSSSTFPYSPKCMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKLQQQQVDRGDFSPCGTPTGLDARDHQFDLQLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALCTGSPIPSPTHSPNMFNQNLVPSFHITSEAPKESGSTSAPAGTASVSTGQQSVNISVGKEVMVNGEDGYDEGNGRQSSSHDDCDLQECLEHNLPDSPFASPTKATGPGGFMAPFSNGPNEAIDADASAASANSKFGTGTLLPAASALDMGTFKSFNCQIPRFSSGHGTIGMFAGTGGPIGI* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0093 700 SMART rrm1_1 354 424 IPR000504 GO:0003723
Gso12g0093 700 MobiDBLite consensus disorder prediction 79 97 - -
Gso12g0093 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 365 410 IPR000504 GO:0003723
Gso12g0093 700 CDD RRM_AtC3H46_like 355 424 IPR034365 -
Gso12g0093 700 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 688 - -
Gso12g0093 700 MobiDBLite consensus disorder prediction 547 574 - -
Gso12g0093 700 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 247 IPR000571 GO:0046872
Gso12g0093 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 429 IPR000504 GO:0003723
Gso12g0093 700 SUPERFAMILY CCCH zinc finger 225 247 IPR036855 GO:0046872
Gso12g0093 700 Gene3D - 217 307 - -
Gso12g0093 700 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 688 - -
Gso12g0093 700 MobiDBLite consensus disorder prediction 61 101 - -
Gso12g0093 700 ProSiteProfiles Zinc finger C3H1-type profile. 222 249 IPR000571 GO:0046872
Gso12g0093 700 SMART c3hfinal6 224 248 IPR000571 GO:0046872
Gso12g0093 700 Gene3D - 351 450 IPR012677 -
Gso12g0093 700 MobiDBLite consensus disorder prediction 610 636 - -
Gso12g0093 700 MobiDBLite consensus disorder prediction 583 602 - -
Gso12g0093 700 SUPERFAMILY RNA-binding domain, RBD 365 443 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0093 Gso-Chr12 789069 793675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0093 - - gmx:100797806 1360.9