Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0068 ATGGCATTTCACGTAGCTTGTCCAATTACATGTCGCCGAATCTGTTTCTGCACGCTAGGGTTTCCGCGCGCGCTCCACGCTTCTCCCGACGCTCCCAATGCCTTCGTTCACGACGTTTCAGCTCTCCGCGACTTCCTCGCCGACACGCGCAGGGACGACGCCACCGTTCAGGTCCCCGTCCCCAAGGTCCTGCCGCCGCTTCCGCCTCCGTCCGACGCTGTTCCTCTTGGCCCTGACGCGCTCGATGAGTCCGCCTCCATGAAGGCCAAGCGCATCGCCCTCCAGCGCAAGGGCGCCGCCGCCATGATCGCCGCCGAGGAGTACGCTCGCCGCTTCGAGTCCGGCGATGTTGTGAATACTCCGGGAAATCTTACTGGAGAGGAGCAGGGTCAAGCCAATAGGAGCTATTGTCGAATTTGCAAGTGTGGAGAAAATGAAGGAAGTGAGAAAGCTCAGAAGATGCTATCGTGCAAAAGTTGTGGCAAGAAGTACCATAGGAACTGCTTGAGAAGTTGGGGTCGAAATAGAGATTTGTTTCATTGGAGTTCATGGACCTGTCCTCTTTGCCGGATTTGTGAGGCTTGCAGAAGGACTGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGGTGCGATGGTGCTTACCATTGTTATTGTCTTCAACCTCCGCACAAGAGTGTTTGTAATGGGCCGTATTTGTGCACAAAACACGCAAGATGTCACAGTTGTGGATCCAATGTCCCTGGAAATGGACTAAGTGTGAGGTGGTTTATGGCATATACCAACTGCGATGCATGTGGAAGATTGTTTACGAAAGGGAACTACTGTCCTGTTTGTTTGAAGGTTTACAGAGATTCAGAATCAACACCTATGGTTTGTTGTGATACTTGCCAGCTCTGGGTACATTGCCAGTGTGATAATATCAGTGAAGAAAAATATCACCAGTTTCAAGTGGATGGGAATTTGCAGTATAAATGTCCTACGTGTCGTGGGGAATGTTATCAGGTCAAGAATCCTGAAGATGCTGCCCAAGAGATTTGGAGGAGAAGGAATATTGCTGAGAGAGATTTGATTTCTAGCTTGAGGGCTGCAGCTGGTTTGCCAACTCAAGAAGAAATATTTTCTATATCACCATTTTCAGATGATGAGGATAGTGGGCCTTTAAAACTAAAGAGTGAATCTGCCCGTTCCTTTAAGTTCTCTCTAAAAAATTTGGCCAATGACTCACCAAAGAAGAAAACTTCAAGCAAAAAGACTGCTAAGAAAAAAAACTCTCAGTCATTTATGACTAGTAAAATTGACACACACAATAGTTGTGAAGGACATAGTGATATTAAATCTTTGCATAGCTTAGATGATGATAAGAATGATGATATACAATCCCAGAGAAATGAAGGTCCAGATGTATACTCATCTCCTGCTACTGGAAGCTTGAGTCAAACTGAAGCATCTTTTCCTATTAATCAGCCAGGGATTTTGAAACAAAAGTTTGTTGATGAGGTGATGGTCAGTGATGAAGAGAGGAAACCCAGAGTAGTTCGAATTAAAAGCAACAAGGCACATATTCCAGATAGTGAAGAGGAAAGTGGAAAACACAGTCTTAAGACTCAGAATGTGAAAGGGAAGAAGTTGGTTATAAATTTGGGAGCGCGGAAAATTAACGTGGCTAGTTCCCCACGGTCTGATTCATCAAGCTGCCAAAAAGATCAAGATCCGGTGACTGTTAATGGAAATGAAGATAGAAGCCAATGGAGGAAGGGAGACAAGTTTGCATTAGATAGACAAGATGACACAGCTAGGCATATTGACGGTAAAGGAATCAAAGTTGATTCTGGGCAATCAAAATTTTTCAGGGTTTCGGGAAGAGAAGGGAATTTGATTAAGCTTGGAAAAGTTAAGCCAGACATTTCTGAATTCAACCTGACCTCTGGTAGAGGCAATATGTCTGATGGGCGGATAAAACATAGTATTGATGGAATGATTAATCAGGTTGGAATAAAAGCTACATCAAGAGGTGAAAGGACATATTTGGGGAGGCAGTCAGAAGGCAGCTCTGATGCATATGAGACAGATGACAATAATAATCGTACACCTTCACATTCTTTGCCAAAAGATTCCAAACCTTTACTAAGATTTAAATTCAAGAAACCCAGCATTGAAAGTCAAAATTCTCCTCATCAGGAGGAAGAGAAGATGACAATCAAGGGCCAGAGGTCAAAAAGGAAGAGACCTTCACCTTTTAAGGAGAAAGCATCTTTTAATGAGTCTGAAGGTGTAAGTCAATCACATCAAGACAGTGCAATGGATGGGATAATGGATGCAAACTGGATATTGATGAAATTGGGCAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAAGGACTGGTTACTGACGTAGTTGAAGGCACTTCAAAGTTATATGTTGCATTAGACGATGGGAAAGTGAAGACCGTGGAACTCAGGAAACAGGGGGTACGTTTTGTTCCTCAAAAGCAGAAGAGATCAAAGACATGA 2538 0.4389 MAFHVACPITCRRICFCTLGFPRALHASPDAPNAFVHDVSALRDFLADTRRDDATVQVPVPKVLPPLPPPSDAVPLGPDALDESASMKAKRIALQRKGAAAMIAAEEYARRFESGDVVNTPGNLTGEEQGQANRSYCRICKCGENEGSEKAQKMLSCKSCGKKYHRNCLRSWGRNRDLFHWSSWTCPLCRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKSVCNGPYLCTKHARCHSCGSNVPGNGLSVRWFMAYTNCDACGRLFTKGNYCPVCLKVYRDSESTPMVCCDTCQLWVHCQCDNISEEKYHQFQVDGNLQYKCPTCRGECYQVKNPEDAAQEIWRRRNIAERDLISSLRAAAGLPTQEEIFSISPFSDDEDSGPLKLKSESARSFKFSLKNLANDSPKKKTSSKKTAKKKNSQSFMTSKIDTHNSCEGHSDIKSLHSLDDDKNDDIQSQRNEGPDVYSSPATGSLSQTEASFPINQPGILKQKFVDEVMVSDEERKPRVVRIKSNKAHIPDSEEESGKHSLKTQNVKGKKLVINLGARKINVASSPRSDSSSCQKDQDPVTVNGNEDRSQWRKGDKFALDRQDDTARHIDGKGIKVDSGQSKFFRVSGREGNLIKLGKVKPDISEFNLTSGRGNMSDGRIKHSIDGMINQVGIKATSRGERTYLGRQSEGSSDAYETDDNNNRTPSHSLPKDSKPLLRFKFKKPSIESQNSPHQEEEKMTIKGQRSKRKRPSPFKEKASFNESEGVSQSHQDSAMDGIMDANWILMKLGNDAIGKRVEVHQTSDNSWHKGLVTDVVEGTSKLYVALDDGKVKTVELRKQGVRFVPQKQKRSKT* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0068 845 MobiDBLite consensus disorder prediction 670 764 - -
Gso12g0068 845 CDD RING-H2 137 190 - -
Gso12g0068 845 MobiDBLite consensus disorder prediction 420 435 - -
Gso12g0068 845 MobiDBLite consensus disorder prediction 721 735 - -
Gso12g0068 845 ProSitePatterns Zinc finger PHD-type signature. 137 189 IPR019786 -
Gso12g0068 845 MobiDBLite consensus disorder prediction 436 461 - -
Gso12g0068 845 PANTHER PHD FINGER FAMILY PROTEIN 2 839 - -
Gso12g0068 845 MobiDBLite consensus disorder prediction 673 701 - -
Gso12g0068 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 246 IPR013083 -
Gso12g0068 845 SUPERFAMILY FYVE/PHD zinc finger 181 242 IPR011011 -
Gso12g0068 845 MobiDBLite consensus disorder prediction 503 534 - -
Gso12g0068 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 331 IPR013083 -
Gso12g0068 845 MobiDBLite consensus disorder prediction 554 579 - -
Gso12g0068 845 SMART PHD_3 139 190 IPR001965 -
Gso12g0068 845 SMART PHD_3 191 237 IPR001965 -
Gso12g0068 845 SMART PHD_3 274 329 IPR001965 -
Gso12g0068 845 SUPERFAMILY FYVE/PHD zinc finger 272 332 IPR011011 -
Gso12g0068 845 MobiDBLite consensus disorder prediction 405 490 - -
Gso12g0068 845 PANTHER HISTONE ACETYLTRANSFERASE 2 839 - -
Gso12g0068 845 MobiDBLite consensus disorder prediction 503 540 - -
Gso12g0068 845 ProSitePatterns RecR protein signature. 262 284 IPR015967 GO:0006281|GO:0006310|GO:0046872
Gso12g0068 845 ProSiteProfiles Zinc finger RING-type profile. 137 190 IPR001841 -
Gso12g0068 845 ProSiteProfiles Zinc finger PHD-type profile. 272 331 IPR019787 -
Gso12g0068 845 SUPERFAMILY FYVE/PHD zinc finger 128 190 IPR011011 -
Gso12g0068 845 SMART ring_2 275 328 IPR001841 -
Gso12g0068 845 SMART ring_2 137 189 IPR001841 -
Gso12g0068 845 MobiDBLite consensus disorder prediction 554 583 - -
Gso12g0068 845 MobiDBLite consensus disorder prediction 462 487 - -
Gso12g0068 845 ProSiteProfiles Zinc finger PHD-type profile. 134 192 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0068 Gso-Chr12 582523 589521 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0068 - - gmx:100815407 1695.25