Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0049 ATGTCTCCTTCACGATGTGTTGTTGGTCTTCTGGAACAATGCTCAAGCATGAGAGAGATGAAGCAAATCCACGGCCACGCCATCACCCACGGCCTCGCTCGATTCGCCTTCATCTCAAGCAAACTCCTATCCTTCTACGCCCGCAGCGATCTCCGCTACGCCCACACTCTCTTCTCTCACATCCCTTTCCCCAACCTCTTCGACTACAACACCATCATAACCGCTTTCTCCCCCCATTATTCCTCCCTCTTCTTCATCCAGATGCTAAACGCCGCCGTTTCCCCCAACTCCCGCACCTTCTCCCTCCTCCTCTCCAAATCCTCTCCCTCTCTCCCCTTCCTCCATCAGCTCCACTCCCACATCATCAGACGCGGCCACGTCTCCGACTTCTACGTCATCACCTCCCTCCTCGCCGCATACTCCAACCACGGTTCCACACGCGCTGCCCGCCGCCTGTTCGACCAAAGTCCTTACAAAAACGTCGCATGCTGGACAAGCCTCGTTACCGGATACTGCAACAACGGCCTGGTAAACGACGCCAGGAACTTGTTCGACGCAATCCCCGAGAGAGAGAGAAACGACGTGTCGTACAGCGCAATGATATCTGGCTACGTCAAGAACGGTTGTTTCCGCGAGGGGATTCAACTTTTCCGTGAACTCAAAGACCGAAATGTGAAGCCGAATAACTCTCTTTTGGCGAGTGTTCTCAGCGCGTGTGCTTCCGTTGGCGCGTTTGAAGAAGGCAAGGGGATACACTCTTACGTGGATCAAAACAAAAGCCAATGTTATTATGAACTTGAGCTCGGAACCGCGTTGATTGATTTCTACACCAAATGCGGGTGCGTGGAACCTGCTCAGCGGGTGTTCGGTAACATGAAAACCAAAGACGTAGCTGCGTGGAGCGCCATGGTACTGGGCTTGGCTATTAACGCCAAGAACCAGGAGGCCCTTGAGCTGTTTGAGGAGATGGAGAAAGTGGGCCCAAGGCCCAACGCCGTTACTTTCATCGGCGTTCTCACCGCGTGCAATCACAAGGACCTGTTTGGAGAAGCACTTAAGTTGTTTGGATACATGAGTGATAAATATGGGATTGTGGCGTCGATAGAGCACTATGGGTGCGTGGTTGATGTGTTGGCTCGGAGTGGGAAAATAGAAGAGGCGTTGGAGTTTATTAAGAGTATGGAAGTGGAACCGGACGGAGTCATATGGGGGTCTTTGTTGAATGGGTGTTTCTTGCATAATAATATTGAGTTGGGGCACAAAGTTGGAAAACATCTGGTAGAGTTAGAGCCTGGGCATGGTGGAAGGTACGTTCTTTTGTCGAACGTGTATGCGACTATGGGGAAGTGGGAGGCTGTTTTGGAGACCAGGAAATTCATGAAAGACAGAGGTGTGCCTGCTGTTTCTGGTTCGAGTTTCATAGAGATTCATCAAACCGTACACAAGTTTCTTGTTCATGATAACAACCACCACTGTGGTTCGTATCCGGCTGAAGTCTATCGAGTGTTAAACCACCTTGGTAACAAACTTGAGGATTATTCTAAATCACATGAAATTATTGTTTTTTGA 1569 0.5022 MSPSRCVVGLLEQCSSMREMKQIHGHAITHGLARFAFISSKLLSFYARSDLRYAHTLFSHIPFPNLFDYNTIITAFSPHYSSLFFIQMLNAAVSPNSRTFSLLLSKSSPSLPFLHQLHSHIIRRGHVSDFYVITSLLAAYSNHGSTRAARRLFDQSPYKNVACWTSLVTGYCNNGLVNDARNLFDAIPERERNDVSYSAMISGYVKNGCFREGIQLFRELKDRNVKPNNSLLASVLSACASVGAFEEGKGIHSYVDQNKSQCYYELELGTALIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRPNAVTFIGVLTACNHKDLFGEALKLFGYMSDKYGIVASIEHYGCVVDVLARSGKIEEALEFIKSMEVEPDGVIWGSLLNGCFLHNNIELGHKVGKHLVELEPGHGGRYVLLSNVYATMGKWEAVLETRKFMKDRGVPAVSGSSFIEIHQTVHKFLVHDNNHHCGSYPAEVYRVLNHLGNKLEDYSKSHEIIVF* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0049 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 190 IPR002885 -
Gso12g0049 522 TIGRFAM PPR: pentatricopeptide repeat domain 371 395 IPR002885 -
Gso12g0049 522 TIGRFAM PPR: pentatricopeptide repeat domain 163 187 IPR002885 -
Gso12g0049 522 TIGRFAM PPR: pentatricopeptide repeat domain 195 228 IPR002885 -
Gso12g0049 522 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 4 514 - -
Gso12g0049 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Gso12g0049 522 Pfam E motif 413 475 IPR046848 -
Gso12g0049 522 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 514 - -
Gso12g0049 522 Gene3D Tetratricopeptide repeat domain 267 495 IPR011990 GO:0005515
Gso12g0049 522 Pfam PPR repeat family 193 231 IPR002885 -
Gso12g0049 522 Pfam PPR repeat family 295 342 IPR002885 -
Gso12g0049 522 Pfam PPR repeat 160 185 IPR002885 -
Gso12g0049 522 Gene3D Tetratricopeptide repeat domain 156 266 IPR011990 GO:0005515
Gso12g0049 522 Gene3D Tetratricopeptide repeat domain 4 155 IPR011990 GO:0005515
Gso12g0049 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Gso12g0049 522 Pfam PPR repeat 370 395 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0049 Gso-Chr12 426958 428722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0049 117 490 Glycoside Hydrolase AT3G49170 33.245 2.77e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0049 - - gmx:106795222 1035.4