Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0042 ATGGGTTTCCCGCAAAGGTTGCTGTTTATATTGGCAGCAAGTACCATATTGAGTGTAACGGGTTTGAAGCATAACTATGGAGAAGCTTTGTCAAAGAGCTTATTGTTCTTTGAAGGACAGAGGTCTGGGAAATTGCCACCAACACAGAGAATGACTTGGAGGAAGGATTCTGCGCTTCAAGATGTCTATATAGTCCCTGCTGATACTACTGTCTTACCTTTCCTTCGTAATAAAGTTGACTTGGTTGGTGGTTACTACGATGCTGGCGACAACGTGAAATTCAACTTTCCAATGGCATTTTCAACAACCATGCTTGCCTGGAGTGTGATAGAGTTCGGAAAATTCATGGGTCCAGACCTTAAACATGCGTTAGACGCTATTCGTTGGGCCACAGAGTATTTCCTCAAAGCCACAAGCATCCCCGGTTTTGTGTTTGCACAAGTCGGTGACCCATATGCTGATCACAATTGCTGGGAGAGACCTGAAGACATGGACACCCCCAGAACAGCCTTTGCCGTTAGCAGAGACTTCCCTGGCTCTGAAGTTTCAGCAGAGATAGCAGCTGCACTTGCAGCCTCCTCAATTGTATATAGGAAGTATCATTTAGGTTACTCTACAAGACTTCTCCAAAGGGCTATAAAGGTTTTTGATTTTGCAGATAAGTACAGAGGATCATACAATGACAGCCTCGGACCGTGGGTATGCCCATTCTATTGTGATTTTAGTGGCTACCAGGACGAATTGGTGTGGGGAGCAGCATGGTTGTTCAAGGCTACTAAACGCCCTTACTACGCAGATTACATTGACAAAAACATTCATAATCTGAAAAACTTTGCTGAATTTGGATGGGACTCAAAGGATGCTGGCATCAACGTGCTCGTGTCTAAGCTTCTAATTAATAGTAGCTCTAATTCTAAGCCTTTCATCCTCAACAATGCTGACAAGTTTGTCTGTTCTGTGCTACCTGAATCACCTTCAGTATTGGTCTCATACTCTTCAGGTGGGCTTCTATTCAAGCCTGGAGGGAGTAACTTGCAGCATGCAACAGCAATCTCATTTCTGTTTCTGGTTTATGCTGGCTATTTGAAACAGACAAATAAAGAGATTGACTGTGGGGGTAAAGTTTTTGCTTCTCCAAAGCGACTCAAACAAATAGCAAGAGGCCAGGTGGATTACATACTAGGAAGCAATCCAGCGAATATGTCTTACATGGTAGGATACGGAGCAAAATATCCTGAAAGAATACATCATCGTGCGTCGTCATTGCCATCCGTGGATGAGCACCGCGGCCACATTGGTTGCAAAGGAGGATCATTTTATTTTGACAACCAAAATGCAAACCCCAACTTGCTTGTCGGAGCTGTTGTGGGAGGACCAGATATGAAGGATTCATACGCAGATTCTCGAGCAGATTTTGTACACTCTGAACCTACAACATACATCAATGCACCTCTTGTGGGTGTTTTGGCATACTTCAATTCACATCCATCCTAG 1494 0.4391 MGFPQRLLFILAASTILSVTGLKHNYGEALSKSLLFFEGQRSGKLPPTQRMTWRKDSALQDVYIVPADTTVLPFLRNKVDLVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKFMGPDLKHALDAIRWATEYFLKATSIPGFVFAQVGDPYADHNCWERPEDMDTPRTAFAVSRDFPGSEVSAEIAAALAASSIVYRKYHLGYSTRLLQRAIKVFDFADKYRGSYNDSLGPWVCPFYCDFSGYQDELVWGAAWLFKATKRPYYADYIDKNIHNLKNFAEFGWDSKDAGINVLVSKLLINSSSNSKPFILNNADKFVCSVLPESPSVLVSYSSGGLLFKPGGSNLQHATAISFLFLVYAGYLKQTNKEIDCGGKVFASPKRLKQIARGQVDYILGSNPANMSYMVGYGAKYPERIHHRASSLPSVDEHRGHIGCKGGSFYFDNQNANPNLLVGAVVGGPDMKDSYADSRADFVHSEPTTYINAPLVGVLAYFNSHPS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0042 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Gso12g0042 497 SUPERFAMILY Six-hairpin glycosidases 20 495 IPR008928 GO:0005975
Gso12g0042 497 PANTHER ENDOGLUCANASE 9 496 - -
Gso12g0042 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 465 483 IPR033126 -
Gso12g0042 497 Gene3D - 21 497 IPR012341 GO:0005975
Gso12g0042 497 PANTHER ENDO-1,4-BETA-GLUCANASE 9 496 - -
Gso12g0042 497 Pfam Glycosyl hydrolase family 9 26 489 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0042 Gso-Chr12 361586 364947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0042 3 497 Glycoside Hydrolase AT1G70710 58.434 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0042 K01179 - gmx:100808980 967.992