Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0041 ATGGATATGGTAGGTGGATACTATGACGCTGGCGACAATGTGAAATTCAATTTTCCCATGGCATTCACAATGAGCATGCTAGGTTGGAGTGTCTTAGAATTTGGAGATCTGATGGGTTCAGAGTTGCAAAATGCATTGGAAGCAATCCGGTGGGGAAGTGATTATTTTCTCAAAGCCACAAAATATCCTAATATAGTTGTGGCACAAGTTGGCAATCCCATTGCCGATCACGGTTGTTGGGAGAGGCCAGAAGACATGGACACTCCTCGAACCTCCTACTTTGTTTCTCAGAAAAGGCCAGGTTCAGAACTCTCTGCTGAGATTGCTGCCGCACTTGCAGCATCTTCCATGGCTTTTAGGAAAACTGATCCTCACTATTCCAACTTGCTTCTCATTAAGGCTATGCAGGTATTTGACTTTGCAAATAAATATCGTGGATCTTATAATAACAGCGTCGGTGCGGGAGCATGCCCCTTCTACTGTGATATTAGTGGCTACATGGATGAGTTGATTTGGGGAGCAGCATGGTTGTATAAAGCCAGTAATAGGCCCAATTATCGGGATTTTGTGAAAGCAAACATCCAATCCATGGGCAATCTTGATGAATTTGGATGGGACTGCAAGCATGCTGGCATAAATGTGCTTGTTTCGCAGTGGGCGATGGCTGATGCATCCAGTAGAGATCTTTTCATTCCTAATGCAGATAAATTTATATGCTCGTTGTTGCCGAGTTCGCCCACCAAATCTGTCTCGTACTCTAAAGGTGGACTTCTATTCAAACCTGGAGGATGTAACCTACAACACACAACAGCTCTGTCATTTCTTTTAATTGTTTATGCACGTTACATGCAATCTGCGAGGAAAACAGTAACATGTGGGAATGAAGTTGCCGACCCAGCTAGGCTCATAAATCTTGCAAAAAGTCAGGTGGATTACATATTGGGAAAGAACCCACTAGGAATGTCATACATGGTAGGGTATGGAGCCAAGTACCCTGAGAAGATACACCACCGAGGTTCAACTTTACCATCTGTGGATATGCACCCACAACATATCCAGTGTCGTGAGGGAGACCAATATTTCAAATCAGAAAAACCCAATCCTAACATCCTAACAGGGGCTGTGGTTGGAGGACCTGCGGAAGATGTTTCTTTTCAGGATTCGCGCTATAATGCTGGTCAATCAGAGCCAACAACATACGTCAATGCTCCTTTTGTTGGTCTTTTGGCTTACTTCAACAAGCCTACTATTAGTTAG 1257 0.4383 MDMVGGYYDAGDNVKFNFPMAFTMSMLGWSVLEFGDLMGSELQNALEAIRWGSDYFLKATKYPNIVVAQVGNPIADHGCWERPEDMDTPRTSYFVSQKRPGSELSAEIAAALAASSMAFRKTDPHYSNLLLIKAMQVFDFANKYRGSYNNSVGAGACPFYCDISGYMDELIWGAAWLYKASNRPNYRDFVKANIQSMGNLDEFGWDCKHAGINVLVSQWAMADASSRDLFIPNADKFICSLLPSSPTKSVSYSKGGLLFKPGGCNLQHTTALSFLLIVYARYMQSARKTVTCGNEVADPARLINLAKSQVDYILGKNPLGMSYMVGYGAKYPEKIHHRGSTLPSVDMHPQHIQCREGDQYFKSEKPNPNILTGAVVGGPAEDVSFQDSRYNAGQSEPTTYVNAPFVGLLAYFNKPTIS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0041 418 PANTHER ENDOGLUCANASE 1 415 - -
Gso12g0041 418 Pfam Glycosyl hydrolase family 9 1 409 IPR001701 GO:0004553|GO:0005975
Gso12g0041 418 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 312 338 IPR018221 -
Gso12g0041 418 PANTHER ENDO-1,4-BETA-GLUCANASE 1 415 - -
Gso12g0041 418 SUPERFAMILY Six-hairpin glycosidases 2 414 IPR008928 GO:0005975
Gso12g0041 418 Gene3D - 1 417 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0041 Gso-Chr12 355657 357582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0041 1 413 Glycoside Hydrolase AT1G70710 58.273 1.01e-180 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0041 K01179 - gmx:100808442 842.417