Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0012 ATGATGAACAGACTGGTGGTAGAAGTTGTGGAGGCTAGCGACCTGATGCCCAAAGATGGGGAAGGGTCAGCTAGCCCCTTTGTAGAGGTAAAGTTGGATGAGCAGCAGCACAGCACTGAAACAAAGCACAAAGACCTGAATCCTTGTTGGAATGAAAAGTTTGTGTTCAACATCAATAACCCCAGAGATCTTGCGCACAAGACAATTGAAGTGGTTGTATACAATCACAACGATAGGAACCACAATAACTTCCTCGGAAGGGTGAGACTTTCAGGCGCCTCTATCCCTCTATCGGAGTCCCAGGCTCGTGTGGAACGCTACCCACTTGAGAAACGTGGCCTCTTCTCAAACATCAGGGGAGATATTGCTCTCAGATGTTATGCGGTGCATGATCATGCTGATGCTGAGGAACACCATCACCCCCAAGTAGACACTCCTGCTGCTGAGGAGGCGTATCAGGGCACTCCCTTTCAAGAAATAAACCCCAACATCAACATGGTGCTAGATGAGGAAAGCGTGGTTGGTGACGGGGACAAGAATAAGAAGAAGAAGATGAAAAAGAAAGAGAAGGAAGTCAGGACTTTTCACTCTATTCCAGCAGCAGCGAAGGCATACCCGGCGCCGGCAATGGAAACAACGCAAAGGAGGGTTGATTTTGCAAAAGCTGGGCCACCCAATGTAATGTTAATGCAGCAGATCCCTAGGCAAAATCCTGAGTATTCGTTGGTGGAGACTAGTCCACCACTGGCGGCTCGTTTGCGCTATAGAGGAGGAGGAGGAGGGGACAAGATATCCACCACCTACGACTTAGTGGAACAGATGAATTACTTGTACGTGAATGTCGTCAAGGCTAGGGATCTACCTGTCATGGATATAACTGGAAGCCTTGACCCTTATGTGGAAGTCAAGCTTGGTAACTACAAGGGCCTGACCAAGCACTTGGACAAGAACCAGAACCCTGTCTGGAAGCAAATCTTTGCCTTCTCCAAGGACAGGTTGCAGTCCAATTTGCTTGAAGTCACCGTCAAGGATAAGGACATTGGCAAGGATGATTTTGTGGGGAGAGTTATGTTTGATCTCACCGAGGTTCCTCTTCGGGTACCCCCTGACAGCCCCTTGGCTCCTCAATGGTACAGACTGGAGGACAAGAAGGGCCAAAAAATTCATAATAACGGGGAAATCATGCTTGCGGTTTGGATGGGAACTCAAGCGGATGAGTCCTTCCCGGAGGCCTGGCACTCTGATGCTCACAACGTTAGTCACTCCAACCTTTCAAACACCCGCTCAAAGGTCTACTTCTCCCCCAAGCTTTACTATCTTAGAGTTCAAGTAATCGAGGCTCAGGATCTCGTTCCTTCCGAAAAAGGAAGGCCCCCTGACTCCCTTGTTAGAGTGCAGCTAGGGAATCAGATGAGATTCACCCGGCCTTCTCAAATTAGAGGCACCAACCCTGTTTGGAATGACGAGCTTATGTTTGTGGCCGCCGAGCCATTTGAGGATTTTATCATTGTCACTGTTGAGGACAAAGTTGGTCCTAATGTTGAAATCTTAGGAAGGGAGATCATATCCGTCAGAAGTGTTCTTCCCAGACACGAGTCCAGCAAGAAGCTCCCCGATTCTCGTTGGTTCAATTTACACAGGCCCAATGCGGTTGGCGAGGAAGAAACACAGAAAAAGAAGGAGAAATTCTCAAGCAAGATTCACCTCCGAGTGTGTCTTGAGGCCGGCTACCACGTGCTTGATGAGTCCACGCATTTCAGCAGTGATCTTCAGCCATCCTCCAAACATTTGAGGAAGAAAAACATTGGAATTCTCGAACTTGGGATCCTTAGTGCCCGCAATTTGCTGCCCATGAAGGCCAGGGAAGGGAGGACTACTGATGCATACTGTGTGGCCAAGTATGGCAACAAATGGGTTCGAACCAGAACTCTGCTTGATACTCTCTCCCCTCGATGGAATGAGCAATATACCTGGGAGGTTCATGATCCGTGCACTGTCATCACAGTTGGGGTTTTTGACAACCACCACATCAATGGGAGCAGTGATGCCAGAGATCAGAGAATTGGAAAGGTGAGAATCAGGTTGTCAACTCTGGAGACTGATAGGGTGTATACTCATTTTTATCCTCTGCTGGTTCTCCAACCCAATGGCCTGAAGAAGAATGGAGAGCTTCACTTGGCAGTGAGATTCACTTGCACCGCATGGGTTAACATGGTAGCCCAGTATGGTAGGCCTTTGCTGCCCAAAATGCATTATGTCCAACCAATACCCGTCAGGCACATAGATTGGCTCCGCCACCAGGCCATGCAGATTGTGGCAGCTCGCCTATCTAGAGCCGAGCCACCCCTTAGGCGTGAAGCAGTTGAGTACATGCTCGACGTTGACTACCACATGTGGAGTTTAAGGAGAAGCAAAGCCAACTTTCAACGCATAATGTCACTCCTCAAAGGAGTTACAGCTATTTGCAAATGGTTTGATGACATCTGTACCTGGAGAAACCCAATCACAACCTGCCTTGTTCACGTCTTGTTCTTGATACTGGTTTGCTACCCGGAATTGATACTGCCCACCATTTTTCTTTACTTGTTTGTAATTGGTATTTGGAATTACCGGTTCAGGCCAAGGCATCCACCCCACATGGATGCTAGGCTTTCACAAGCAGAAGCTGCTCACCCAGATGAACTGGACGAGGAATTTGACACTTTTCCAACAACAAAACCTTCAGATATTGTGAGAATGAGGTATGACAGATTGCGGAGTGTGGCAGGTAGAGTGCAGACTGTGGTTGGAGATTTGGCTACTCAAGGAGAAAGAGCTCAAGCCATACTTGGTTGGAGAGACTCCAGGGCTACATCCATCTTCATCATCTTCTCACTCATTTGGGCTGTTTTCATTTACATTACTCCCTTCCAAGTCGTTGCAATTCTAGTTGGCCTCTATATGCTACGTCATCCTCGGTTTAGGAGCAAGATGCCATCGGTACCAGTTAATTTCTTCAAGAGATTGCCTTCCAAATCAGATATGCTGATATGA 3033 0.4791 MMNRLVVEVVEASDLMPKDGEGSASPFVEVKLDEQQHSTETKHKDLNPCWNEKFVFNINNPRDLAHKTIEVVVYNHNDRNHNNFLGRVRLSGASIPLSESQARVERYPLEKRGLFSNIRGDIALRCYAVHDHADAEEHHHPQVDTPAAEEAYQGTPFQEINPNINMVLDEESVVGDGDKNKKKKMKKKEKEVRTFHSIPAAAKAYPAPAMETTQRRVDFAKAGPPNVMLMQQIPRQNPEYSLVETSPPLAARLRYRGGGGGDKISTTYDLVEQMNYLYVNVVKARDLPVMDITGSLDPYVEVKLGNYKGLTKHLDKNQNPVWKQIFAFSKDRLQSNLLEVTVKDKDIGKDDFVGRVMFDLTEVPLRVPPDSPLAPQWYRLEDKKGQKIHNNGEIMLAVWMGTQADESFPEAWHSDAHNVSHSNLSNTRSKVYFSPKLYYLRVQVIEAQDLVPSEKGRPPDSLVRVQLGNQMRFTRPSQIRGTNPVWNDELMFVAAEPFEDFIIVTVEDKVGPNVEILGREIISVRSVLPRHESSKKLPDSRWFNLHRPNAVGEEETQKKKEKFSSKIHLRVCLEAGYHVLDESTHFSSDLQPSSKHLRKKNIGILELGILSARNLLPMKAREGRTTDAYCVAKYGNKWVRTRTLLDTLSPRWNEQYTWEVHDPCTVITVGVFDNHHINGSSDARDQRIGKVRIRLSTLETDRVYTHFYPLLVLQPNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIVAARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFQRIMSLLKGVTAICKWFDDICTWRNPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRHPPHMDARLSQAEAAHPDELDEEFDTFPTTKPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAILGWRDSRATSIFIIFSLIWAVFIYITPFQVVAILVGLYMLRHPRFRSKMPSVPVNFFKRLPSKSDMLI* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0012 1010 Pfam C2 domain 603 710 IPR000008 -
Gso12g0012 1010 Pfam C2 domain 4 103 IPR000008 -
Gso12g0012 1010 Pfam C2 domain 276 378 IPR000008 -
Gso12g0012 1010 Pfam C2 domain 439 535 IPR000008 -
Gso12g0012 1010 Gene3D C2 domain 578 732 IPR035892 -
Gso12g0012 1010 Gene3D C2 domain 419 575 IPR035892 -
Gso12g0012 1010 Pfam Plant phosphoribosyltransferase C-terminal 855 1009 IPR013583 -
Gso12g0012 1010 Gene3D C2 domain 264 399 IPR035892 -
Gso12g0012 1010 CDD C2C_MCTP_PRT_plant 439 592 - -
Gso12g0012 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 276 416 IPR035892 -
Gso12g0012 1010 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 2 1010 - -
Gso12g0012 1010 CDD C2B_MCTP_PRT_plant 276 402 - -
Gso12g0012 1010 Gene3D C2 domain 2 155 IPR035892 -
Gso12g0012 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 603 736 IPR035892 -
Gso12g0012 1010 SMART C2_3c 439 536 IPR000008 -
Gso12g0012 1010 SMART C2_3c 604 707 IPR000008 -
Gso12g0012 1010 SMART C2_3c 276 372 IPR000008 -
Gso12g0012 1010 SMART C2_3c 4 109 IPR000008 -
Gso12g0012 1010 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Gso12g0012 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 438 594 IPR035892 -
Gso12g0012 1010 ProSiteProfiles C2 domain profile. 418 537 IPR000008 -
Gso12g0012 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 145 IPR035892 -
Gso12g0012 1010 ProSiteProfiles C2 domain profile. 586 708 IPR000008 -
Gso12g0012 1010 ProSiteProfiles C2 domain profile. 258 378 IPR000008 -
Gso12g0012 1010 CDD C2D_MCTP_PRT_plant 604 727 - -
Gso12g0012 1010 PANTHER BNAA09G30540D PROTEIN 2 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0012 Gso-Chr12 119487 123235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0012 2 1010 Lipid Metabolism Gene Families AT1G22610 71.996 0.0 1496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0012 - - gmx:100778133 2018.82