Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0006 ATGAGTGAGAGTAACGGGAACAGCAGGAGGCGAAATGTTGAAGATCAAGATCTGGGACTGTACTTCTTGGAGGCGTGCAGGGGTAGGGAGATGAAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGCACCCAGGGAGCTCAACACCATTAACAGCTCTGGTGGTTTCGTCGTGGTTTCCACGGACAAGTTGTCGGTAAAGTACACCAGCGTCAACCTTCACGGCCACGACGTCGGTGTCATTCAGGCCAACAAGCCTGCTCCTACCAAGCGCCTCATGTACTATTTCGAGATTCATGTCAAGGATGCCGGCGTTAAGGGCCAGATAGCCATTGGATTCACCTCCGAGACCTTCAAGATGCGAAGACAACCAGGGTGGGAGGCCAATAGCTGCGGCTATCACGGCGATGATGGTCTGCTCTACCGTGGACATGGCAAGGGGGGAGAGCCGTTTGGCCCAACCTATACATCCGGAGACGTAGTTGGTGCCGGAATTAACTATGCTGCCCAGGAATTTTTTTTCACTAAGAATGGCCATGTTGTCGGCTCTGTTTACAAAGACATGAAAGGCCCCCTTTTTCCAACCGTTGCTGTTCACAGCCAAAACGAAGAGGTGCATGTCAACTTTGGGCAGAAACCATTTACTTTTGACCTAAAGGAATTTGAAACACAAGAAAGAATGAAGCAGCAACTGAAAATAGAGGAAATTTCTGTGCCACCAAATGTCAGTTACGGCAGAATTGTCCGCTCCTACCTGCTACACTATGGCTATGAAGATACATTGAATTCATTTGATGTGGCTAGTAAAAGTACTGTTCCTCCTATATACATAGCTCAAGAAAGTGGAATTGATGAGCAGGAAATAACATATGCCTTGAATCATAGAAAGACTTTACGACAGCTAATCAGGAATGGGGACATTGATGTTGCATTTGGTAAATTACGTGAATGGTATCCACAGATTGTTGAGGACAATACATCAGCTACATGTTTTCTGCTTCATTGTCAAAAATTTATCGAATTAGTTCGGGTTGGAGCACTTGAAGAGGCTGTCAAATATGGAAGGATGGAATTGTCAAGTTTTTATGACTTGCCTGTGTTTAAGGATTTAGTTCAGGACTGTGTTGCTTTGCTGGCATATGAACGGCCTCTGGAATCCTCCGTAGGTTATCTTCTAAAAGACTCTCAGCGTGAAGTTGTAGCTGACACAGTAAATGCCATGATATTGTCCACAAATCTTAATATGAAAGATTCAAAACATTGTTTGCACTCTTATCTTGAGAGGTTACTTAGACAGCTTACTGCTTGCTGCTTAGTGAGGCGATCCCTGAATGGAGAGCAGGGAGAAGCTTTCCAACTTCAGAGAGTGCTTAGCAGTAGTAGAAGAGGCTAG 1389 0.4528 MSESNGNSRRRNVEDQDLGLYFLEACRGREMKEEEEEEEEEAPRELNTINSSGGFVVVSTDKLSVKYTSVNLHGHDVGVIQANKPAPTKRLMYYFEIHVKDAGVKGQIAIGFTSETFKMRRQPGWEANSCGYHGDDGLLYRGHGKGGEPFGPTYTSGDVVGAGINYAAQEFFFTKNGHVVGSVYKDMKGPLFPTVAVHSQNEEVHVNFGQKPFTFDLKEFETQERMKQQLKIEEISVPPNVSYGRIVRSYLLHYGYEDTLNSFDVASKSTVPPIYIAQESGIDEQEITYALNHRKTLRQLIRNGDIDVAFGKLREWYPQIVEDNTSATCFLLHCQKFIELVRVGALEEAVKYGRMELSSFYDLPVFKDLVQDCVALLAYERPLESSVGYLLKDSQREVVADTVNAMILSTNLNMKDSKHCLHSYLERLLRQLTACCLVRRSLNGEQGEAFQLQRVLSSSRRG* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0006 462 Pfam SPRY domain 93 210 IPR003877 GO:0005515
Gso12g0006 462 Gene3D - 25 229 IPR043136 -
Gso12g0006 462 CDD SPRY_RanBP_like 78 209 IPR044736 -
Gso12g0006 462 MobiDBLite consensus disorder prediction 29 48 - -
Gso12g0006 462 SMART SPRY_3 90 212 IPR003877 GO:0005515
Gso12g0006 462 SMART ctlh 290 348 IPR006595 -
Gso12g0006 462 PANTHER RAN-BINDING PROTEIN M HOMOLOG 28 459 - -
Gso12g0006 462 SMART toby_final6 344 445 IPR013144 -
Gso12g0006 462 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 215 IPR013320 -
Gso12g0006 462 PANTHER RAN BINDING PROTEIN 9-RELATED 28 459 - -
Gso12g0006 462 ProSiteProfiles B30.2/SPRY domain profile. 24 213 IPR001870 -
Gso12g0006 462 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 290 348 IPR006595 -
Gso12g0006 462 Pfam CTLH/CRA C-terminal to LisH motif domain 292 434 IPR024964 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0006 Gso-Chr12 66639 76235 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0006 K23334 - gmx:100797084 918.302