Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3732 ATGGTTCTGGCGGAGTTAGGTGGGAGCATTGCGCGTGCTCTCCAGCTGATGAGCAATGCGACAGTAATCGACGAGAAGGTGCTCAACGATTGCCTCAACGACATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTTGTCCGCGACATGCAGACCAACATCAAGAACATTGTCAACCTCGACGATCTCGCTGCCGGTCACAACAAACGCAGGATCATCCAACAAGCTGTGTTTAACGAACTCTGCAAAATTCTGGACCCTGGGAAGCCCTCTTTCACTCCCAAAAAGGGCAAAACAAGTGTTGTCATGTTTGTTGGTTTGCAAGGTTCTGGAAAAACCACAACGTGTACAAAGTATGCATATTATCATCAGAAGAAAGGCTGGAAGCCGGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCAACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAATCCGATCCGGTAAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGAGGCACAAACAAGAAGCTTCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAAGCCCAAGCATTTAAGCAGAGTGTTGCAGTTGGAGCTGTAATTGTTACCAAAATGGATGGCCATGCAAAAGGTGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGACGAGTTTGAAGTTTTTGATGTTAAGCCATTTGTCAGTCGTCTATTAGGAATGGGCGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTCGTTCCTATGGATCAACAACCTGAACTGCTTCAGAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTTTTTTCTATGCTTCCCGGATTTAGTGCTGAATTAATGCCAAAAGGCCGTGAGAAAGAAAGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGATTCAATGACAAACGAAGAGTTGGATAGTTCAAACCCCAAGCTCATGAATGAGTCACGCATGATGCGGATAGCTCGAGGTGCAGGTCGTCAGATTAGGGAAGTGATGGAGATGTTGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAAGGTGATATGAGTGCCCTATCCCGAAATATGAATGCCCAACACATGAGCAAAGTCCTTCCTCCTCAGATGCTGAAGCAAATTGGTGGCATGGGTGGGTTACAAAACTTGATGAAGCAGATGGGATCCGCCAAAGACATGATGGGAATGGGAGGAATGTTTGGTGGTGGTGGTGGTGGTGATTAG 1503 0.4398 MVLAELGGSIARALQLMSNATVIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKNIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEASLFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGAGRQIREVMEMLEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMGGMFGGGGGGD* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3732 500 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 497 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Gso11g3732 500 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 497 - -
Gso11g3732 500 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Gso11g3732 500 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Gso11g3732 500 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Gso11g3732 500 CDD SRP54_G 102 294 - -
Gso11g3732 500 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Gso11g3732 500 Gene3D - 5 306 IPR042101 -
Gso11g3732 500 Gene3D - 311 452 IPR036891 GO:0006614|GO:0008312|GO:0048500
Gso11g3732 500 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Gso11g3732 500 Gene3D - 91 285 IPR027417 -
Gso11g3732 500 SMART AAA_5 100 277 IPR003593 -
Gso11g3732 500 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Gso11g3732 500 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Gso11g3732 500 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Gso11g3732 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Gso11g3732 500 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Gso11g3732 500 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3732 Gso-Chr11 52906020 52910432 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3732 K03106 - gmx:100789217 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0064 15 554744 558721 Gso11g3732 11 52906020 52910432 GST
Gso11g3732 11 52906020 52910432 Gso8g1777 8 17324355 17327687 PCT
Gso8g1777 8 17324355 17327687 Gso11g3732 11 52906020 52910432 PCT