Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3378 ATGAGTTCAGCGGATCATGACTCCGACCCTCCCATCCGACTCGACTTGCCTCCGCTCTCACCGAGCCTCTTCGATTCCGAACCATCATCGGAGCTCCAACAACAATCCAACGGATCCGCCGCCCGACCCTCCTCCTACCCCTCCAGCCCCACTAGTAGCGGTTACGCCGCCGAAAGGGGCAGTAGCAGCACCGCCTCAAGCATCTCCCAGGTCGATGACGTCCTCCACCACGAAATTCAAGAGATCACCATCCACGATTCCCAACCTCAACCTCCCTCTCACTCCTCCTGGCTTCCCGGAAAACGACACGCCGATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTAATTCTGGCAAACCAATATATTCTAGGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGGGGTGACCATGTCAAATTAGTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTTATGGCCAGATGATTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTACCTCTTGCATATGCAACCAGGCAAGCTGCCGGTGCTATCTTGCAGGACGTTGCTGATTCTGGTGTTCTGTTTGCTATTCTGATGTGCAGACACAAGGTTATCAGTCTAGTTGGTGCTCAGAAAGCCTCTCTTCATCCAGATGATATGCTGCTCCTGGCCAACTTTGTTATGTCATCAGAATCCTTTAGGACTTCAGAAGCATTTTCTCCCGTGTGCTTGCCAAGATACAATGGTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGATGATGACACATACTTGATGTTGCTGACCACTAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGGATTCGTATTGAAACGGTACTTTTGAAGTCAAATGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGTGGGATGCATGTTGAGGATGTACCGCCCTTACCTAGTTCTGGATCATCTCCTCATTTGAGCCAGCATAGGCTTCCATCAGATTCTCCTGAAAGGGAACCTAATTGTCACATTGGTGGTGTTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCACCGATTAACACTCCTAAGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGTTCTGCTCTGTTGGGTAACACAGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGGCCTTGGCAATAAAGACGTGCAATCGGGTGTGTCAGTGGGTAAAAGATGTGGAAAATGAAATATTTTTGCTGGGAGCTAGCCCCTTTTCATGGTGA 1647 0.4542 MSSADHDSDPPIRLDLPPLSPSLFDSEPSSELQQQSNGSAARPSSYPSSPTSSGYAAERGSSSTASSISQVDDVLHHEIQEITIHDSQPQPPSHSSWLPGKRHADEDDASISWRKRKKHFFVLSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDHVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYESLRGQLELIYGQMIVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADSGVLFAILMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRTSEAFSPVCLPRYNGLAFLYAYIHFFDDDTYLMLLTTSSDAFYHLKDCRIRIETVLLKSNVLSEVQRSLLDGGMHVEDVPPLPSSGSSPHLSQHRLPSDSPEREPNCHIGGVAGLWHFIYRSIYLDQYISSEFSSPINTPKQQKRLYRAYQKLFASMHDKGIGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNRVCQWVKDVENEIFLLGASPFSW* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3378 548 PANTHER SAND PROTEIN-RELATED 45 548 IPR004353 GO:0006623
Gso11g3378 548 MobiDBLite consensus disorder prediction 401 424 - -
Gso11g3378 548 MobiDBLite consensus disorder prediction 82 103 - -
Gso11g3378 548 PANTHER BNAC04G15860D PROTEIN 45 548 - -
Gso11g3378 548 Pfam First Longin domain of FUZ, MON1 and HPS1 118 238 IPR043972 GO:0016192
Gso11g3378 548 MobiDBLite consensus disorder prediction 23 69 - -
Gso11g3378 548 Pfam Second Longin domain of FUZ, MON1 and HPS1 279 370 IPR043971 GO:0016192
Gso11g3378 548 MobiDBLite consensus disorder prediction 1 69 - -
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 118 135 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 136 156 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 170 184 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 221 233 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 250 271 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 274 287 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 298 314 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 323 346 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 351 377 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 497 511 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 513 526 IPR004353 GO:0006623
Gso11g3378 548 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 526 546 IPR004353 GO:0006623
Gso11g3378 548 Pfam Third Longin domain of FUZ, MON1 and HPS1 434 534 IPR043970 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3378 Gso-Chr11 49679164 49684463 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3378 K20195 - gmx:100814534 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3378 11 49679164 49684463 Gso11g1508 11 17609399 17613089 PCT
Gso11g1508 11 17609399 17613089 Gso11g3378 11 49679164 49684463 PCT