Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1485 ATGTGCACAGAAGCAGAAATACAAGCTTATGGCCAAAGTTTTGCTAGTGGGAAGTCAGGAACCAGATCTAGCTTTTTGAAGCCCAACATAAATTGTAATTTGAGCTCATGGGTTAATGGTTGTGAACCCGGATGGGGTTGCAAAGCTAATCAAAAAGTAGACATTGGTAGTCACAAGAAGGGCATACCTATCAGATCCGTTGATTGCCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATCCCTTGCCCATTAGGCTCTTATTGTCCACGTGCACAACTCAATAAAACTAGTGGAGTATGTGAACCATATCGTTATCAGCTTCCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATTTGGGCAGATATTCAGAGTAGTAGTGAGGTGTTCTGTTCAGCAGGGTCATTTTGTCCCTCTACAATTGTAAAAAATCCTTGCAATAAAGGGTATTATTGTAGAACAGGTTCTACTACTCAGGAGCGGTGTTTCAAGTTGGCATCTTGCGAGCCTAAGTCATCAAATCAAAATATTACTGCATATGGTGTCTTAGTTTTTGCTGGCTTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGACCAAGTTCTTGCAACTCGAGAAAAAAGACAAGCAAAATCAAGAGAAAGAGCTGCTCAAAGTGTGCGAGAATCACAAGCACGTGAAAAATGGAAATCTGCAAAAGACACCGCTAAAAAGCATGCAGTAGGACTACAATCACAATTATCACGTACATTTTCTCGCAAAACTTCAAAGAATCCAGATTTGAAAGGTTTTGGTTCTAAACATTCGGATTCTACTTTACCACCTGTTGGTACATCAAAGGGAAAGAAAAAGGACAAAAACAATCTCTCAAAAATAATAAATGACATTGAGGAAAATCCTAATAATTCAGAAGGGTTTAATGTTCAGATAGGAGATAAAAATGTCAAAAAACAAGCACCAAGGGGCAAGCAATTACACACTCAAAGTCAAATTTTCAAGTATGCATATGGCCAGATTGAAAAAGAGAAGGCTTTAGCAGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAATGACATTGAGATAAGGAAGAGACCTACCATTGAGGTTGCTTTCAAAGACTTAACCCTCACTTTGAAAGGGAAAAATAAACATTTATTGAGATGTGTGACTGGTAAATTACATCCAGGTAGAGTTTCAGCAGTCATGGGTCCATCTGGGGCCGGCAAGACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACAACTGGGCAAGTTCTTGTAAATGGTAAAGAATCTTCTATCAGATCATACAAGAAAATCATAGGTTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAAAATCTATGGTTTAGTGCTAGATGCAGACTCTCTGCTGATCTACCAAAAGAAGAGAAGGTGTTAGTGGTTGAAAGAGTCATTGAGTCATTAGGTCTACAAGCAATAAGGGATTCTTTAGTTGGGACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAATGTAGGATTGGAAATGGTTATGGAACCTTCCCTTTTAATTTTGGATGAACCCACTTCTGGTTTGGATAGCTCATCTTCTCAATTACTACTTAGAGCACTTAGACGTGAAGCTCTTGAGGGAGTAAACATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAGGGAGGCCTGACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTTTCAAGCATGGGCATCAATGTCCCTGACCGTGTTAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGAACTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCTGTGCCCATGGATATGCTACAAACTATGGAAGGAATGGCTGCGCCAAGTGGTGAAGGTTCATCACATGGAGCAGCAACTGCTACAGAAAACAACGAAGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAAAAGGATAACCTTCACCTGAACTTCTTAAGTTCAAATGATTTGTCTGATCGATTAACACCAGGAGTGTTCAACCAATACAAATACTTTCTTGGAAGAGTTGGTAAGCAGCGACTAAGAGAAGCTAGAACACAGGCTGTGGATTTTTTGATTTTGCTTTTAGCTGGCCTTTGCTTAGGAACACTTGCTAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACTGTAATAGCAGTATCTCTCCTTTCTAAAATCGCAGCTTTAAGATCATTCTCATTGGATAAGTTGCACTATTGGCGAGAAAGTTCTTCAGGCATGAGTAGTTTGGCTTACTTTCTATCAAAAGATACCGTTGACCATTTTAGCACAATTATCAAGCCACTAGTTTACCTTTCCATGTTTTATTTCTTCAACAATCCAAGATCTTCAGTCACAGATAACTACATGGTTCTGTTGTGTTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCAATCTTTCTTCAACCAGGTCCAGCACAACTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTGGTAGCAACCTATAGCAATGAGGAAGATAGCAAATATATAAAATTTCTATCTGACTTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTAATATCAAATGCTAAAAGATACACTGGAGTTTGGTTAATAAGTCGATGTGGGGCACTCTATACTAATGGCTATGATCTTAAACATTGGTACCAATGTTTAGGCCTTCTTATCGTAATGGGAATCATTAGTCGCATGCTTGCTTTTTCCTGTATGATAACATTCCAGAAGAAATAG 2979 0.3921 MCTEAEIQAYGQSFASGKSGTRSSFLKPNINCNLSSWVNGCEPGWGCKANQKVDIGSHKKGIPIRSVDCQPCCEGFFCPHGLTCMIPCPLGSYCPRAQLNKTSGVCEPYRYQLPPGKPNHTCGGADIWADIQSSSEVFCSAGSFCPSTIVKNPCNKGYYCRTGSTTQERCFKLASCEPKSSNQNITAYGVLVFAGLCFLLIIIYNCSDQVLATREKRQAKSRERAAQSVRESQAREKWKSAKDTAKKHAVGLQSQLSRTFSRKTSKNPDLKGFGSKHSDSTLPPVGTSKGKKKDKNNLSKIINDIEENPNNSEGFNVQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMANDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLHPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGKESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVNYKQLPVRWMLHNGYPVPMDMLQTMEGMAAPSGEGSSHGAATATENNEAPSFAGELWQDVKCNVEMKKDNLHLNFLSSNDLSDRLTPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSSVTDNYMVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYSNEEDSKYIKFLSDLCYTKWALEAFVISNAKRYTGVWLISRCGALYTNGYDLKHWYQCLGLLIVMGIISRMLAFSCMITFQKK* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1485 992 Pfam ABC transporter 403 552 IPR003439 GO:0005524
Gso11g1485 992 SMART AAA_5 409 610 IPR003593 -
Gso11g1485 992 Gene3D - 371 623 IPR027417 -
Gso11g1485 992 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 4 989 - -
Gso11g1485 992 CDD ABCG_EPDR 381 607 - -
Gso11g1485 992 MobiDBLite consensus disorder prediction 220 296 - -
Gso11g1485 992 MobiDBLite consensus disorder prediction 250 268 - -
Gso11g1485 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 620 IPR027417 -
Gso11g1485 992 MobiDBLite consensus disorder prediction 220 246 - -
Gso11g1485 992 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524
Gso11g1485 992 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 989 - -
Gso11g1485 992 Pfam ABC-2 type transporter 581 992 IPR043926 GO:0140359
Gso11g1485 992 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 624 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1485 Gso-Chr11 17275446 17281094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1485 410 605 Calmodulin-binding Proteins AT2G36910 27.907 4.63e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1485 - - gsj:114375953 1955.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1485 11 17275446 17281094 Gso11g1485 11 17275446 17281094 ECH
Gso12g0640 12 6084493 6088327 Gso11g1485 11 17275446 17281094 GST